PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2zkqj_

Fold library id	PDB Header	Molecule	Title
c2zkqj_	PDB header: ribosomal protein/rna	Chain: J: PDB Molecule:	PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map

Links to external resources
Added to library: Tue Mar 16 14:23:43 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R I R I T L T S R N V K S L E K V C A D L I R G A K E K N L K V K G P V R M P T K T L R I T T R K T P C G E G S K T W D R F Q M R I H K R L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
S S S
S
S S S S
T T
T T
B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . .

Sequence I D L H S P S E I V K Q I T S I S I E P G V E V E V T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
S
T
S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	I	R	I	T	L	T	S	R	N	V	K	S	L	E	K	V	C	A	D	L	I	R	G	A	K	E	K	N	L	K	V	K	G	P	V	R	M	P	T	K	T	L	R	I	T	T	R	K	T	P	C	G	E	G	S	K	T	W	D	R	F	Q	M	R	I	H	K	R	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		B							S	S																			S				S																S	S	S	S		T	T		T	T									B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Sequence	I	D	L	H	S	P	S	E	I	V	K	Q	I	T	S	I	S	I	E	P	G	V	E	V	E	V	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			B		S		T													S	S