PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2yytA_

Fold library id	PDB Header	Molecule	Title
c2yytA_	PDB header: lyase	Chain: A: PDB Molecule: orotidine 5'-phosphate decarboxylase;	PDBTitle: crystal structure of uncharacterized conserved protein from2 geobacillus kaustophilus

Links to external resources
Added to library: Tue Mar 16 12:55:16 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P F I V A L D F P S K Q E V E R F L R P F A G T P L F V K V G M E L Y Y Q E G P A I V A F L K E Q G H A V F L D L K L H D I P N T V K Q A M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S G G G G G S
T T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K G L A R V G A D L V N V H A A G G R R M M E A A I E G L D A G T P S G R M R P R C I A V T Q L T S T D E R M L H E E L W I S R P L V E T V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S G G G
T S
T T S
S S
T T
T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A H Y A A L A K E S G L D G V V C S A N E A A F I K E R C G A S F L A V T V T P R K A R A L G S D Y I V I G R S L T R A A D P L R T Y A R L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
G G G
T T S
T T
S B
T
S S

. . . . .

Sequence Q H E W N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	F	I	V	A	L	D	F	P	S	K	Q	E	V	E	R	F	L	R	P	F	A	G	T	P	L	F	V	K	V	G	M	E	L	Y	Y	Q	E	G	P	A	I	V	A	F	L	K	E	Q	G	H	A	V	F	L	D	L	K	L	H	D	I	P	N	T	V	K	Q	A	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S	S									G	G	G	G	G	S															T	T										T											S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	G	L	A	R	V	G	A	D	L	V	N	V	H	A	A	G	G	R	R	M	M	E	A	A	I	E	G	L	D	A	G	T	P	S	G	R	M	R	P	R	C	I	A	V	T	Q	L	T	S	T	D	E	R	M	L	H	E	E	L	W	I	S	R	P	L	V	E	T	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T		S						G	G	G															T	S		T	T	S									S	S		T	T									T	T				S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	H	Y	A	A	L	A	K	E	S	G	L	D	G	V	V	C	S	A	N	E	A	A	F	I	K	E	R	C	G	A	S	F	L	A	V	T	V	T	P	R	K	A	R	A	L	G	S	D	Y	I	V	I	G	R	S	L	T	R	A	A	D	P	L	R	T	Y	A	R	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T								G	G	G										T	T	S													T	T		S	B									T		S	S
	.	.	.	.	.
Sequence	Q	H	E	W	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)