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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2ypdB_

Fold library idPDB HeaderMoleculeTitle
c2ypdB_PDB header: oxidoreductaseChain: B: PDB Molecule: probable jmjc domain-containing histone demethylationPDBTitle: crystal structure of the jumonji domain of human jumonji domain2 containing 1c protein


Added to library: Thu Jan 10 02:43:04 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MIPHSWICEKHILWLKDYKNSSNWKLFKECWKQGQPAVVSGVHKKMNISLWKAESISLDFGDHQADLLNC
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Known secondary structure (DSSP)


TTTT

TT
TTTTT



GGGTS
GGGGSTTS



T
 .........80.........90.........100.........110.........120.........130.........140
Sequence KDSIISNANVKEFWDGFEEVSKRETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLPEYCNPEGKFNLAS
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Known secondary structure (DSSP) TT

B
S

TSSBGGG





SSSBTS
SSSTT
TT

TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence HLPGFFVGPRLCSAYGVVAAKDHDIGTTNLHIEVSDVVNILVYVGIAKGNGILSKAGILKKFEEEDLDDI
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Known secondary structure (DSSP) TS
GGG




STTTT
TT

S
SS

B
TT


TS


 .........220.........230.........240.........250.........260.........270.........280
Sequence LRKRLKDSSEIPGALWHIYAGKDVDKIREFLQKISKEQGHDPIRDQSWYVNKKLRQRLLEEYGVRTCTLI
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Known secondary structure (DSSP) T
TT


GGG


T








 .........290.........300.........310.........320......
Sequence QFLGDAIVLPAGALHQVQNFHSCIQVTEDFVSPEHLVESFHLTQEL
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Known secondary structure (DSSP) TT

TT
SS

GGG


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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