PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2ynuB_

Fold library id	PDB Header	Molecule	Title
c2ynuB_	PDB header: hydrolase	Chain: B: PDB Molecule: gim-1 protein;	PDBTitle: apo gim-1 with 2mol. crystal structures of pseudomonas aeruginosa2 gim-1: active site plasticity in metallo-beta-lactamases

Links to external resources
Added to library: Sat Jul 27 08:52:13 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K P L E V I K I E D G V Y L H T S F K N I E G Y G L V D S N G L V V L D N N Q A Y I I D T P W S E E D T K L L L S W A T D R G Y Q V M A S I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T T T S
S S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S T H S H E D R T A G I K L L N S K S I P T Y T S E L T K K L L A R E G K P V P T H Y F K D D E F T L G N G L I E L Y Y P G A G H T E D N I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S T T T T
T T
S
S S T T T T
S S S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . .

Sequence V A W L P K S K I L F G G C L V R S H E W E G L S I S S W A D S I K N I V S K K Y P I Q M V V P G H G K V G S S D I L D H T I D L A E S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T T S
T T
S
S S S S
B
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	P	L	E	V	I	K	I	E	D	G	V	Y	L	H	T	S	F	K	N	I	E	G	Y	G	L	V	D	S	N	G	L	V	V	L	D	N	N	Q	A	Y	I	I	D	T	P	W	S	E	E	D	T	K	L	L	L	S	W	A	T	D	R	G	Y	Q	V	M	A	S	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T											T	T	T													T	T						S			S	S														T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	T	H	S	H	E	D	R	T	A	G	I	K	L	L	N	S	K	S	I	P	T	Y	T	S	E	L	T	K	K	L	L	A	R	E	G	K	P	V	P	T	H	Y	F	K	D	D	E	F	T	L	G	N	G	L	I	E	L	Y	Y	P	G	A	G	H	T	E	D	N	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S	S	S					T	T							T	T																T	T					S					S	S					T	T	T	T									S	S	S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Sequence	V	A	W	L	P	K	S	K	I	L	F	G	G	C	L	V	R	S	H	E	W	E	G	L	S	I	S	S	W	A	D	S	I	K	N	I	V	S	K	K	Y	P	I	Q	M	V	V	P	G	H	G	K	V	G	S	S	D	I	L	D	H	T	I	D	L	A	E	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	T	T						T	T	S			T	T		S																						S					S	S	S			B		T