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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2ymnE_

Fold library idPDB HeaderMoleculeTitle
c2ymnE_PDB header: viral proteinChain: E: PDB Molecule: nucleoprotein;PDBTitle: organization of the influenza virus replication machinery


Added to library: Thu Jan 10 06:53:50 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence NATEIRASVGKMIDGIGRFYIQMCTELKLSDYEGRLIQNSLTIERMVLSAFDTGGPIYRRVDGKWRRELI
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Known secondary structure (DSSP)

ST

STTTSBT


SSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence LYDKEEIRRIWRQANNGDDATAGLTHMMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAA
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Known secondary structure (DSSP)

TTT





T

GGGGGG
TTTTS
TTS
 .........150.........160.........170.........180.........190.........200.........210
Sequence GAAVKGVGTMVMELIRMIKRGINRRTRIAYERMCNILKGKFQTAAQRTMVDQVRESRNPGNAEFEDLIFL
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Known secondary structure (DSSP) TT



T

ST
SS

 .........220.........230.........240.........250.........260.........270.........280
Sequence ARSALILRGSVAHKSCLPACVYGSAVASGYDFEREGYSLVGIDPFRLLQNSQVYSLIRPNENPAHKSQLV
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Known secondary structure (DSSP) TTTS










TT




SSSTTS



TT

 .........290.........300.........310.........320.........330.........340.........350
Sequence WMACHSAAFEDLRVSSFIRGTKVVPRGKLSTRGVQIASNENMETMESSTLELRSRYWAIRTRSGGNTSDM
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Known secondary structure (DSSP) T
SSSBSS



STT


S
SS

TTS
STT





S
B











 .........360.........370.........380.........390.........
Sequence RTEIIRLMESARPEDVSFQGRGVFELSDEKATSPIVPSFDMSNEGSYFF
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Known secondary structure (DSSP)

TT


STT

BB
SS

SS
S
B




S



SB


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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