PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c2ymbC_

Fold library id	PDB Header	Molecule	Title
c2ymbC_	PDB header: protein transport	Chain: C: PDB Molecule: mit domain-containing protein 1;	PDBTitle: structures of mitd1

Links to external resources
Added to library: Thu Jan 10 14:49:10 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P Q S T A A A T V L K R A V E L D S E S R Y P Q A L V C Y Q E G I D L L L Q V L K G T K D N T K R C N L R E K I S K Y M D R A E N I K K Y L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D Q E K E D G K Y H K Q I K I E E N A T G F S Y E S L F R E Y L N E T V T E V W I E D P Y I R H T H Q L Y N F L R F C E M L P C K V K T I H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T
T T B
S S T T
T T
S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L L T S L D E Q V Q Q S R G L Q E I E E S L R S H G V L L E V Q Y S S S I H D R E I R F N N G W M I K I G R G L D Y F K K P Q S R F S L G Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
T T
T T S
S S T T
B
S S T T
T T S

. . . . . . . . . 220 . . . . . . . . .

Sequence C D F D L R P C H E T T V D I F H K K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T S S
B
S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	Q	S	T	A	A	A	T	V	L	K	R	A	V	E	L	D	S	E	S	R	Y	P	Q	A	L	V	C	Y	Q	E	G	I	D	L	L	L	Q	V	L	K	G	T	K	D	N	T	K	R	C	N	L	R	E	K	I	S	K	Y	M	D	R	A	E	N	I	K	K	Y	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T															T	T																					T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	Q	E	K	E	D	G	K	Y	H	K	Q	I	K	I	E	E	N	A	T	G	F	S	Y	E	S	L	F	R	E	Y	L	N	E	T	V	T	E	V	W	I	E	D	P	Y	I	R	H	T	H	Q	L	Y	N	F	L	R	F	C	E	M	L	P	C	K	V	K	T	I	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	T	T	T											T	T	B									S	S	T	T			T	T									S				S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	L	T	S	L	D	E	Q	V	Q	Q	S	R	G	L	Q	E	I	E	E	S	L	R	S	H	G	V	L	L	E	V	Q	Y	S	S	S	I	H	D	R	E	I	R	F	N	N	G	W	M	I	K	I	G	R	G	L	D	Y	F	K	K	P	Q	S	R	F	S	L	G	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																								T	T	T									T	T									T	T	S						S	S	T	T			B				S	S	T	T		T	T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Sequence	C	D	F	D	L	R	P	C	H	E	T	T	V	D	I	F	H	K	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S		T	T	S	S		B		S