PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2yfkA_

Fold library id	PDB Header	Molecule	Title
c2yfkA_	PDB header: transferase	Chain: A: PDB Molecule: aspartate/ornithine carbamoyltransferase;	PDBTitle: crystal structure of a putative transcarbamoylase from2 enterococcus faecalis

Links to external resources
Added to library: Sat May 5 11:43:57 2012

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E T F K E Y I E K L D K L E F E K M Y E N D F F L T W E K T R D E L E A V F T V A D T L R Y L R E N N I S T K I F D S G L G I S L F R T R T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S
G G G T T
B
G G G S
T T B
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R F S F A S A C N L L G L E V Q D L D E E T V R E T A N M I S F M A D I I G I R D D M Y I G K G N A Y M H E V S E S V Q E G Y K D G V L E Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T T T
S S T T T T S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R P T L V N L Q C D I D H P T Q A M A D A L H L I H E F G G I E N L K G K K V A M T W A Y S P S Y G K P L S V P Q G I V G L M T R L G M D V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T S S G G G T T
S S S
S G G G T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence V L A H P E G Y E I M P E V E E V A K K N A A E F G G N F T K T N S M A E A F K D A D V V Y P K S W A P F A A M E K R T E L Y G N G D Q A G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S S
T T
S
T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence I D Q L E Q E L L S Q N K K H K D W E C T E E L M K T T K D G K A L Y M H C L P A D I T G V S C E E G E V E A S V F D R Y R V E L Y K E A S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G T T
B
T S G G G
S
T T T B S S
S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . .

Sequence Y K P Y V I A A M I F L S K V K N P Q K T L T D L A D K A T P R E V K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
B S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	T	F	K	E	Y	I	E	K	L	D	K	L	E	F	E	K	M	Y	E	N	D	F	F	L	T	W	E	K	T	R	D	E	L	E	A	V	F	T	V	A	D	T	L	R	Y	L	R	E	N	N	I	S	T	K	I	F	D	S	G	L	G	I	S	L	F	R	T	R	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	S			G	G	G	T	T			B			G	G	G	S																					T	T	B						S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	F	S	F	A	S	A	C	N	L	L	G	L	E	V	Q	D	L	D	E	E	T	V	R	E	T	A	N	M	I	S	F	M	A	D	I	I	G	I	R	D	D	M	Y	I	G	K	G	N	A	Y	M	H	E	V	S	E	S	V	Q	E	G	Y	K	D	G	V	L	E	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T																		T	T	T	T										S	S	T	T																			T	T	S		S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	P	T	L	V	N	L	Q	C	D	I	D	H	P	T	Q	A	M	A	D	A	L	H	L	I	H	E	F	G	G	I	E	N	L	K	G	K	K	V	A	M	T	W	A	Y	S	P	S	Y	G	K	P	L	S	V	P	Q	G	I	V	G	L	M	T	R	L	G	M	D	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S	S																	T	T	S	S	G	G	G	T	T											S	S	S				S											G	G	G	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	V	L	A	H	P	E	G	Y	E	I	M	P	E	V	E	E	V	A	K	K	N	A	A	E	F	G	G	N	F	T	K	T	N	S	M	A	E	A	F	K	D	A	D	V	V	Y	P	K	S	W	A	P	F	A	A	M	E	K	R	T	E	L	Y	G	N	G	D	Q	A	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T																			S	S						S							T	T		S																							T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	I	D	Q	L	E	Q	E	L	L	S	Q	N	K	K	H	K	D	W	E	C	T	E	E	L	M	K	T	T	K	D	G	K	A	L	Y	M	H	C	L	P	A	D	I	T	G	V	S	C	E	E	G	E	V	E	A	S	V	F	D	R	Y	R	V	E	L	Y	K	E	A	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													G	G	G	T	T			B							T	S	G	G	G								S						T	T	T	B	S	S		S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Sequence	Y	K	P	Y	V	I	A	A	M	I	F	L	S	K	V	K	N	P	Q	K	T	L	T	D	L	A	D	K	A	T	P	R	E	V	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																S															B	S	S