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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2y94A_

Fold library idPDB HeaderMoleculeTitle
c2y94A_PDB header: transferaseChain: A: PDB Molecule: 5'-amp-activated protein kinase catalytic subunit alpha-1;PDBTitle: structure of an active form of mammalian ampk


Added to library: Sat Mar 19 09:43:59 2011
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence HDGRVKIGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHI
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S

TT

SSS
TTT

TTTTT


TTB
 .........80.........90.........100.........110.........120.........130.........140
Sequence IKLYQVISTPSDIFMVMEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVL
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SS

SSTTSSSS

TTT
S

SGGG
 .........150.........160.........170.........180.........190.........200.........210
Sequence LDAHMNAKIADFGLSNMMSDGEFLRSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDD
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Known secondary structure (DSSP)
TT




SS


TT

B


S
STT

TT

B
SSS
SS

S
 .........220.........230.........240.........250.........260.........270.........280
Sequence HVPTLFKKICDGIFYTPQYLNPSVISLLKHMLQVDPMKRATIKDIREHEWFKQDLPKYLFPEDPSYSSTM
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Known secondary structure (DSSP) SSTT




TT

T
SSTTTS

T
TT

TTTTTSSS
SS
S
 .........290.........300.........310.........320.........330.........340.........350
Sequence IDDEALKEVCEKRRIMNEAKDFYLATSPPDSFLDDHHLTRPHPERVPFLVAETPRARHLDELNPQKSKHQ
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Known secondary structure (DSSP) S





TT

SSS
GGGTS



SS
TTTT
S








TTTSSSTTT
S
 .........360.........370.........380.........390.........400.........410.........420
Sequence GVRKAKWHLGIRSQSRPNDIMAEVCRAIKQLDYEWKVVNPYYLRVRRKNPVTSTFSKMSLQLYQVDSRTY
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S
S
TTT
B

TT
TTT


SSS
 .........430
Sequence LLDFRSIDDE
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Known secondary structure (DSSP)



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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