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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2wb1Y_

Fold library idPDB HeaderMoleculeTitle
c2wb1Y_PDB header: transcriptionChain: Y: PDB Molecule: dna-directed rna polymerase rpo1c subunit;PDBTitle: the complete structure of the archaeal 13-subunit dna-2 directed rna polymerase


Added to library: Thu Jan 10 07:31:53 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SYLEEKVKQASNILPQKIVEDLKNLISNKEVLVTRDEIDKIFDLAIKEYSEGLIAPGEAIGIVAAQSVGE
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Known secondary structure (DSSP)

STTSTTTT


TTTT


STTTT

TTT



SS

 .........80.........90.........100.........110.........120.........130.........140
Sequence PGTQLGLPRLIEIVDAKKVPSTPMMTIYLTDEYKHDKEKALEVARKLEYTKIENVVSSTSIDIASMSIIL
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Known secondary structure (DSSP) T


TT

SS
SS



SSSSS
TTSSS

B
SSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence QLDNEMLKDKGVTVDDVKKAINRLKLGEFVIDESEGTTLNISFANIDSIAALFKLRDKILNTKIKGIKGI
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Known secondary structure (DSSP)
STT

STTT
STTSS


SS



TTT
SS

TTT
BSS

S
 .........220.........230.........240.........250.........260.........270.........280
Sequence KRAIVQKKGDEYIILTDGSNLSGVLSVKGVDIAKVETNNIREIEEVFGIEAAREIIIREISKVLAEQGLD
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Known secondary structure (DSSP) S


SSS
SS

TTSTT
S
TTT
TSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence VDMRHILLVADVMTRTGVVRQIGRHGVTGEKNSVLARAAFEVTVKHLLDAAARGDVEEFKGVVENIIIGH
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Known secondary structure (DSSP)

TTSSSS


SSTTTGGGSS

TTTT
STT





ST
 .........360.......
Sequence PIKLGTGMVELTMRPIL
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Known secondary structure (DSSP)

SSGGGT









Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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