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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c2vyuA_

Fold library idPDB HeaderMoleculeTitle
c2vyuA_PDB header: choline-binding proteinChain: A: PDB Molecule: choline binding protein f;PDBTitle: crystal structure of choline binding protein f from2 streptococcus pneumoniae in the presence of a3 peptidoglycan analogue (tetrasaccharide-pentapeptide)


Added to library: Tue Mar 16 12:25:55 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence NTTGGRFVDKDNRKYYVKDDHKAIYWHKIDGKTYYFGDIGEMVVGWQYLEIPGTGYRDNLFDNQPVNEIG
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Known secondary structure (DSSP)


S
TTTTSTT
TTT


B

SSSSTTBSTTS





 .........80.........90.........100.........110.........120.........130.........140
Sequence LQEKWYYFGQDGALLEQTDKQVLEAKTSENTGKVYGEQYPLSAEKRTYYFDNNYAVKTGWIYEDGNWYYL
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Known secondary structure (DSSP)


TTS
B


SS


STTBS
BTTS






B
TTSSB

TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence NKLGNFGDDSYNPLPIGEVAKGWTQDFAPWYYLDASGKMLTDWQKVNGKWYYFGSSGSMATGWKYVRGKW
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Known secondary structure (DSSP)



BS
GGG
B
TTTTSB






TTS
B

STT
TTT




TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence YYLDNKNGDMKTGWQYLGNKWYYLRSSGAMVTGWYQDGLTWYYLNAGNGDMKTGWFQVNGKWYYAYSSGA
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Known secondary structure (DSSP)
TTT

B


SS

TTS
B

TT
TTT

B

TT
TT

 .........290.........300
Sequence LAVNTTVDGYSVNYNGEWVQ
Predicted secondary structure







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Known secondary structure (DSSP) B

STT
TT



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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