PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2vveB_

Fold library id	PDB Header	Molecule	Title
c2vveB_	PDB header: viral protein	Chain: B: PDB Molecule: spike protein p1;	PDBTitle: crystal structure of the stem and receptor binding domain2 of the spike protein p1 from bacteriophage pm2

Links to external resources
Added to library: Tue Mar 16 12:14:33 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E Q T T K S R D V N S F Q I P L R D G V R E L L P E D A S R N R A S I K S P V D I W I G G E N M T A L N G I V D G G R K F E A G Q E F Q I N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
T T
S S
T T
T T S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T F G S V N Y W V S D E E I R V F K E Y S A R A K Y A Q N E G R T A L E A N N V P F F D I D V P P E L D G V P F S L K A R V R H K S K G V D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S
S
B B
S
T T
G G G T T
T T G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G L G D Y T S I S V K P A F Y I T E G D E T T D T L I K Y T S Y G S T G S H S G Y D F D D N T L D V M V T L S A G V H R V F P V E T E L D Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G
S S
S S
T T
S
S S
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 .

Sequence D A V Q E V Q H D W Y D E S F T T F I E V Y S D D P L L T V K G Y A Q I L M E R T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S B
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	Q	T	T	K	S	R	D	V	N	S	F	Q	I	P	L	R	D	G	V	R	E	L	L	P	E	D	A	S	R	N	R	A	S	I	K	S	P	V	D	I	W	I	G	G	E	N	M	T	A	L	N	G	I	V	D	G	G	R	K	F	E	A	G	Q	E	F	Q	I	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		S	S	S								T	T									S	S							T	T					T	T				S						T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	F	G	S	V	N	Y	W	V	S	D	E	E	I	R	V	F	K	E	Y	S	A	R	A	K	Y	A	Q	N	E	G	R	T	A	L	E	A	N	N	V	P	F	F	D	I	D	V	P	P	E	L	D	G	V	P	F	S	L	K	A	R	V	R	H	K	S	K	G	V	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S											S								S			B	B			S									T	T										G	G	G	T	T														T	T	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	L	G	D	Y	T	S	I	S	V	K	P	A	F	Y	I	T	E	G	D	E	T	T	D	T	L	I	K	Y	T	S	Y	G	S	T	G	S	H	S	G	Y	D	F	D	D	N	T	L	D	V	M	V	T	L	S	A	G	V	H	R	V	F	P	V	E	T	E	L	D	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G			S	S													S	S		T	T																		S				S	S											S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Sequence	D	A	V	Q	E	V	Q	H	D	W	Y	D	E	S	F	T	T	F	I	E	V	Y	S	D	D	P	L	L	T	V	K	G	Y	A	Q	I	L	M	E	R	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T	S	B		S