Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2vicA_

Fold library idPDB HeaderMoleculeTitle
c2vicA_PDB header: dna-binding proteinChain: A: PDB Molecule: transposase orfa;PDBTitle: crystal structure of the ishp608 transposase in complex2 with left end 26-mer dna and manganese


Added to library: Wed Jan 9 16:48:36 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VLYKSNHNVVYSCKYHIVWCPKYRRKVLVGAVEMRLKEIIQEVAKELRVEIIEMQTDKDHIHILADIDPS
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP)



SS



BGGG
S


TT

SS


TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence FGVMKFIKTAKGRSSRILRQEFNHLKTKLPTLWTNSCFISTVGGAPLNVVKQYIENQQNSNRPKQKEKWK
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP) T

S
S
SB
S


SS
TTT






STT
 .........150.
Sequence SYVDNLQTKAL
Predicted secondary structure


SS confidence










Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D