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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2v50A_

Fold library idPDB HeaderMoleculeTitle
c2v50A_PDB header: membrane proteinChain: A: PDB Molecule: multidrug resistance protein mexb;PDBTitle: the missing part of the bacterial mexab-oprm system:2 structural determination of the multidrug exporter mexb


Added to library: Wed Jan 9 18:18:10 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence FFIDRPIFAWVIALVIMLAGGLSILSLPVNQYPAIAPPAIAVQVSYPGASAETVQDTVVQVIEQQMNGID
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Known secondary structure (DSSP)
TTT
TTS


SS


S


TT

TTT

S
T
 .........80.........90.........100.........110.........120.........130.........140
Sequence NLRYISSESNSDGSMTITVTFEQGTDPDIAQVQVQNKLQLATPLLPQEVQRQGIRVTKAVKNFLMVVGVV
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Known secondary structure (DSSP) T

TTS
SS

GGGS
TT


 .........150.........160.........170.........180.........190.........200.........210
Sequence STDGSMTKEDLSNYIVSNIQDPLSRTKGVGDFQVFGSQYSMRIWLDPAKLNSYQLTPGDVSSAIQAQNVQ
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Known secondary structure (DSSP) SSTTS
TTSTTSS


TTTT

S

 .........220.........230.........240.........250.........260.........270.........280
Sequence ISSGQLGGLPAVKGQQLNATIIGKTRLQTAEQFENILLKVNPDGSQVRLKDVADVGLGGQDYSINAQFNG
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Known secondary structure (DSSP)


TT
SS

TT











ST


TTT

GGGTS

S
TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence SPASGIAIKLATGANALDTAKAIRQTIANLEPFMPQGMKVVYPYDTTPVVSASIHEVVKTLGEAILLVFL
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Known secondary structure (DSSP) TT

TTTGGGS
TTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence VMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVMAEE
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Known secondary structure (DSSP)

T



 .........430.........440.........450.........460.........470.........480.........490
Sequence GLSPREAARKSMGQIQGALVGIAMVLSAVFLPMAFFGGSTGVIYRQFSITIVSAMALSVIVALILTPALC
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Known secondary structure (DSSP)


TTSSTTTTT

 .........500.........510.........520.........530.........540.........550.........560
Sequence ATMLKPFFGWFNRMFLSTTHGYERGVASILKHRAPYLLIYVVIVAGMIWMFTRIPTAFLPDEDQGVLFAQ
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Known secondary structure (DSSP)




SSTS
B
SS



TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence VQTPPGSSAERTQVVVDSMREYLLEKESSSVSSVFTVTGFNFAGRGQSSGMAFIMLKPWEERPGGENSVF
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Known secondary structure (DSSP)
STT

TTTTS

SS

STT

TTS

SSTTS
 .........640.........650.........660.........670.........680.........690.........700
Sequence ELAKRAQMHFFSFKDAMVFAFAPPSVLTGFDLFLQDQAGVGHEVLLQARNKFLMLAAQNPALQRVRPNGM
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Known secondary structure (DSSP) SSS
SSS


S






SSS
TTS
TTSS
 .........710.........720.........730.........740.........750.........760.........770
Sequence SDEPQYKLEIDDEKASALGVSLADINSTVSIAWGSSYVNDFIDRGRVKRVYLQGRPDARMNPDDLSKWYV
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Known secondary structure (DSSP)






TTTT

S
TT
GGGSSSGGGGTT
 .........780.........790.........800.........810.........820.........830.........840
Sequence RNDKGEMVPFNAFATGKWEYGSPKLERYNGVPAMEILGEPAPGLSSGDAMAAVEEIVKQLPKGVGYSWTG
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Known secondary structure (DSSP)
SSS
GGGG




S
B
SSSB
TT

S
TTTTTGGGS
TT
T
 .........850.........860.........870.........880.........890.........900.........910
Sequence LSYEERLSGSQAPALYALSLLVVFLCLAALYESWSIPFSVMLVVPLGVIGALLATSMRGLSNDVFFQVGL
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Known secondary structure (DSSP) TTTT


STT
SSTTTTTTT

BS
 .........920.........930.........940.........950.........960.........970.........980
Sequence LTTIGLSAKNAILIVEFAKELHEQGKGIVEAAIEACRMRLRPIVMTSLAFILGVVPLAISTGAGSGSQHA
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Known secondary structure (DSSP) TTTTT

TTST

STTTT
 .........990.........1000.....
Sequence IGTGVIGGMVTATVLAIFWVPLFYV
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Known secondary structure (DSSP) T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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