Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2r17C_

Fold library idPDB HeaderMoleculeTitle
c2r17C_PDB header: protein transportChain: C: PDB Molecule: vacuolar protein sorting-associated protein 35;PDBTitle: functional architecture of the retromer cargo-recognition2 complex


Added to library: Tue Mar 16 11:56:29 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFRYKENSKVDDK
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP)
TTTTTTS
TT
SSSTTTTT
SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence WEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFXSQAFSLYEDEISDSK
Predicted secondary structure










SS confidence





































































Known secondary structure (DSSP) TT



TT


 .........150.........160.........170.........180.........190.........200.........210
Sequence AQLAAITLIIGTFERXKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHG
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP) TT




T
SSTT
B
TTTTT
B


 .........220.........230.........240.........250.........260.........270.........280
Sequence GKRVXECLKKALKIANQCXDPSLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEE
Predicted secondary structure
















SS confidence





































































Known secondary structure (DSSP) S

TTT
TTS
TTTTSS


 .........290........
Sequence TEQINKHFHNTLEHLRLR
Predicted secondary structure


SS confidence

















Known secondary structure (DSSP) TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D