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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2pffH_

Fold library idPDB HeaderMoleculeTitle
c2pffH_PDB header: transferaseChain: H: PDB Molecule: fatty acid synthase subunit beta;PDBTitle: structural insights of yeast fatty acid synthase


Added to library: Wed Jan 9 15:33:36 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSS
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP)
B

SSS

B




STTTTTSTTTT
GGGTTTSSSSSSSTT
SSS
SSTT
TTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence LVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKK
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Known secondary structure (DSSP) SSSS


GGGTTTTTS
SSS
TTSS


SSSSS
S


 .........150.........160.........170.........180.........190.........200.........210
Sequence SNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT
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Known secondary structure (DSSP)


SSSSTS




SS
S
S
TTTTSGGGTTGGGTTGGGS

 .........220.........230.........240.........250.........260.........270.........280
Sequence QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA
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Known secondary structure (DSSP) S


TTTTTT
GGG


SSTTSST

S
S


GGG
 .........290.........300.........310.........320.........330.........340.........350
Sequence VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ
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Known secondary structure (DSSP) S

STTTTTTS





T

S

S


SS
TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF
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SS confidence





































































Known secondary structure (DSSP) S
TTT

B




SSS

B
STTS

S


TTS

TTT







B
 .........430.........440.........450.........460.........470.........480.........490
Sequence LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW
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Known secondary structure (DSSP)
S
SS

S
SSSSTTTSTT



TT

S



SSS


S


SS
STTTTTTS


T
 .........500.........510.........520.........530.........540.........550.........560
Sequence ETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFKQXXXXXXXXXXXXXXX
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Known secondary structure (DSSP)



S



SSGGGSSTT
SSS


SS




SSSS

SSSSS
SS






TTTS
 .........570.........580.........590.........600.........610.........620.........630
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP) S




B
TTS





STTTTTSS




SSSSSSSTTTTS

B



SSTTTSTTTTTTTTTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP) TS
TT


B
B

TT
TTS




SS

STTSS

S
B


S
 .........710.........720.........730.........740.........750.........760.........770
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP) TSS
SS
B





SSSBS


S
SSTTTTT

TT





SS

SS
 .........780.........790.........800.........810.........820.........830.........840
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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SS confidence





































































Known secondary structure (DSSP)

SSSS



S



SSTTTTSSSS
T





TTTSSTTSSSS
SS




SSS


B


SG
 .........850.........860.........870.........880.........890.........900.........910
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP) GGTTTTTTTTGGGS
TTTTTTTTSSSSS

SS

SS


TTTS
TTGGGTTT

S
 .........920.........930.........940.........950.........960.........970.........980
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP) SS
S
TTT

S



S
SS



TTTTTTTT

TTTS


TTTTT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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SS confidence





































































Known secondary structure (DSSP) S
SSS


SS


TT
S
TTSS
SSSSSSS

SSSSSSS






STTSSS


TTT
T
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure





































































SS confidence





































































Known secondary structure (DSSP) TTTTT
SSS
S
B
S




S




SS
SSS
SS




SS

TTSS
SS

STTS
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure





































































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Known secondary structure (DSSP) STTGGGS


SSS








SS





SGGG







TTS





B

SSS

B

B


SSSS
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure





































































SS confidence





































































Known secondary structure (DSSP)

B



B



SSS
S
B

STTTTTS
S

S



TTT








STTTTTSSSSS

 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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SS confidence





































































Known secondary structure (DSSP)
STTSSSSS

B


SSSTTTTTTTS


TTS








SS


BSS

B


 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP)





SS






B
SSS








TTTTTTTTTTT














SGGGGTG
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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SS confidence





































































Known secondary structure (DSSP) GGTSS


TTTTSSSSSSSS








B



SSS









TTS







S
SS
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure





































































SS confidence





































































Known secondary structure (DSSP)
SSTTTTTTTS







SSS








TTS
T




TTS


STTSTTT
SS
S

S
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure





































































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Known secondary structure (DSSP) TT
S
GGG








S


SS








TTT




TTS
S



 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence XXXXXXXXXXXXXQGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK
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SS confidence





































































Known secondary structure (DSSP)












SS


TTTT
SSS
S


SS






S
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK
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SS confidence





































































Known secondary structure (DSSP) STTSTTTBTTBTTS

B
SSSS
B
SSTT

SS







SS
SS
TTTT
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence GLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAAS
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP) S


SS

B

STTTTTSSS

S
TS

TTTT

S




SSS
SS
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence FSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEE
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP) TTTTTTTS


B



BTTB


GGGTTT

S
S

SS
SSSS
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence VEGHLFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP) TTS
SS




SSS


S

SSSTTTTTTTTTTTTTSSS

SGGGTTB

SSSS


SS

GGG
 .........1970.........1980.........1990.........2000......
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure













































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Known secondary structure (DSSP) GTT

SSTTTTTTTTSSSSSS
TTTTTTTTTTTTTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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