PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c2ngrB_

Fold library id	PDB Header	Molecule	Title
c2ngrB_	PDB header: hydrolase	Chain: B: PDB Molecule: protein (gtpase activating protein (rhg));	PDBTitle: transition state complex for gtp hydrolysis by cdc42:2 comparisons of the high resolution structures for cdc423 bound to the active and catalytically compromised forms of4 the cdc42-gap.

Links to external resources
Added to library: Tue Mar 16 13:11:07 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L P N Q Q F G V S L Q H L Q E K N P E Q E P I P I V L R E T V A Y L Q A H A L T T E G I F A R S A N T Q V V R E V Q Q K Y N M G L P V D F D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S
T
S S
S S
T T
T T T T T S
T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q Y N E L H L P A V I L K T F L R E L P E P L L T F D L Y P H V V G F L N I D E S Q R V P A T L Q V L Q T L P E E N Y Q V L R F L T A F L V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S T S S S
T T
G G G T G G G S
G G G T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . .

Sequence Q I S A H S D Q N K M T N T N L A V V F G P N L L W A K D A A I T L K A I N P I N T F T K F L L D H Q G E L F P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S T

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	P	N	Q	Q	F	G	V	S	L	Q	H	L	Q	E	K	N	P	E	Q	E	P	I	P	I	V	L	R	E	T	V	A	Y	L	Q	A	H	A	L	T	T	E	G	I	F	A	R	S	A	N	T	Q	V	V	R	E	V	Q	Q	K	Y	N	M	G	L	P	V	D	F	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T			S	S									T		S	S			S	S																T	T		T	T	T	T	T	S																T	T					T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	Y	N	E	L	H	L	P	A	V	I	L	K	T	F	L	R	E	L	P	E	P	L	L	T	F	D	L	Y	P	H	V	V	G	F	L	N	I	D	E	S	Q	R	V	P	A	T	L	Q	V	L	Q	T	L	P	E	E	N	Y	Q	V	L	R	F	L	T	A	F	L	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S			S													T	S	S	S		T	T		G	G	G						T	G	G	G	S		G	G	G										T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Sequence	Q	I	S	A	H	S	D	Q	N	K	M	T	N	T	N	L	A	V	V	F	G	P	N	L	L	W	A	K	D	A	A	I	T	L	K	A	I	N	P	I	N	T	F	T	K	F	L	L	D	H	Q	G	E	L	F	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T																							S	S																					T