Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2mkkA_

Fold library idPDB HeaderMoleculeTitle
c2mkkA_PDB header: translation regulator/rnaChain: A: PDB Molecule: cytoplasmic polyadenylation element-binding protein 1;PDBTitle: structural model of tandem rrm domains of cytoplasmic polyadenylation2 element binding protein 1 (cpeb1) in complex with rna


Added to library: Sat Jul 26 08:26:51 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKDGKHPRCPPKGYVYLVFE
Predicted secondary structure








































SS confidence





































































Known secondary structure (DSSP)



S
S
S



S





SS

TT

SS



GGGGT




S



S
 .........80.........90.........100.........110.........120.........130.........140
Sequence LEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQRLDPSRTVFVGAL
Predicted secondary structure
















































SS confidence





































































Known secondary structure (DSSP)
TTS
SB


TTTT
B
S
SSSSTT

SS
S
SS





TTSSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence HGMLNAEALAAILNDLFGGVVYAGIDTDKHKYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQID
Predicted secondary structure

























SS confidence





































































Known secondary structure (DSSP)
S


SSS

S
SSSSS

SS

S

SS


 ...
Sequence PYL
Predicted secondary structure


SS confidence


Known secondary structure (DSSP)



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D