PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2mkkA_

Fold library id	PDB Header	Molecule	Title
c2mkkA_	PDB header: translation regulator/rna	Chain: A: PDB Molecule: cytoplasmic polyadenylation element-binding protein 1;	PDBTitle: structural model of tandem rrm domains of cytoplasmic polyadenylation2 element binding protein 1 (cpeb1) in complex with rna

Links to external resources
Added to library: Sat Jul 26 08:26:51 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M T W S G Q L P P R N Y K N P I Y S C K V F L G G V P W D I T E A G L V N T F R V F G S L S V E W P G K D G K H P R C P P K G Y V Y L V F E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
S
S
S S
T T
S S
G G G G T
S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L E K S V R S L L Q A C S H D P L S P D G L S E Y Y F K M S S R R M R C K E V Q V I P W V L A D S N F V R S P S Q R L D P S R T V F V G A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S B
T T T T
B
S
S S S S T T
S S
S
S S
T T S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence H G M L N A E A L A A I L N D L F G G V V Y A G I D T D K H K Y P I G S G R V T F N N Q R S Y L K A V S A A F V E I K T T K F T K K V Q I D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S S
S
S S S S S
S S
S
S S

. . .

Sequence P Y L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	T	W	S	G	Q	L	P	P	R	N	Y	K	N	P	I	Y	S	C	K	V	F	L	G	G	V	P	W	D	I	T	E	A	G	L	V	N	T	F	R	V	F	G	S	L	S	V	E	W	P	G	K	D	G	K	H	P	R	C	P	P	K	G	Y	V	Y	L	V	F	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S		S		S					S														S	S			T							T			S	S								G	G	G	G	T						S									S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	E	K	S	V	R	S	L	L	Q	A	C	S	H	D	P	L	S	P	D	G	L	S	E	Y	Y	F	K	M	S	S	R	R	M	R	C	K	E	V	Q	V	I	P	W	V	L	A	D	S	N	F	V	R	S	P	S	Q	R	L	D	P	S	R	T	V	F	V	G	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T	S		S	B				T	T	T	T		B					S		S	S	S	S	T	T										S	S		S				S	S							T	T	S						S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	H	G	M	L	N	A	E	A	L	A	A	I	L	N	D	L	F	G	G	V	V	Y	A	G	I	D	T	D	K	H	K	Y	P	I	G	S	G	R	V	T	F	N	N	Q	R	S	Y	L	K	A	V	S	A	A	F	V	E	I	K	T	T	K	F	T	K	K	V	Q	I	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S														S	S	S			S								S	S	S	S	S									S	S													S					S	S
	.	.	.
Sequence	P	Y	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)