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Protein Homology/analogY Recognition Engine V 2.2 |
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Fold library id | PDB Header | Molecule | Title |
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c2lm3A_ | PDB header: ligase | Chain: A: PDB Molecule: tripartite motif-containing protein 5; | PDBTitle: structure of the rhesus monkey trim5alpha pryspry domain |
Added to library: Sat Aug 11 13:23:35 2012 | |
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Links to external resources | |
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  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 |
Sequence | T | E | L | T | D | A | R | R | Y | W | V | D | V | T | L | A | T | N | N | I | S | H | A | V | I | A | E | D | K | R | Q | V | S | S | R | N | P | Q | I | M | Y | Q | A | P | G | T | L | F | T | F | P | S | L | T | N | F | N | Y | C | T | G | V | L | G | S | Q | S | I | T | S |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | ![]() | ![]() | ![]() | ![]() | ![]() | G | G | G | B | ![]() | ![]() | S | S | ![]() | ![]() | S | S | S | S | ![]() | ![]() | ![]() | S | S | S | T | T | T | S | S | S | T | T | T | T | S | S | B | ![]() | ![]() | S | S | B | S |   | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 |
Sequence | G | K | H | Y | W | E | V | D | V | S | K | K | S | A | W | I | L | G | V | C | A | G | F | Q | S | D | A | M | Y | N | I | E | Q | N | E | N | Y | Q | P | K | Y | G | Y | W | V | I | G | L | Q | E | G | V | K | Y | S | V | F | Q | D | G | S | S | H | T | P | F | A | P | F | I |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | S | T | T | S | T | T | T | T | T | G | G | G | T | G | G | G | T | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | T | ![]() | ![]() | ![]() | ![]() | T | T | S | T | T | S |   | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . |
Sequence | V | P | L | S | V | I | I | C | P | D | R | V | G | V | F | V | D | Y | E | A | C | T | V | S | F | F | N | I | T | N | H | G | F | L | I | Y | K | F | S | Q | C | S | F | S | K | P | V | F | P | Y | L | N | P | R | K | C | T | V | P | M | T | L | C | S | P | |||||
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | ![]() | ![]() | S | S | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | T | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | S | S | S | B | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | S | ![]() | ![]() |
Download: | PDB structure | FASTA sequence |
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