PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2lemA_

Fold library id	PDB Header	Molecule	Title
c2lemA_	PDB header: lipid transport	Chain: A: PDB Molecule: apolipoprotein a-i;	PDBTitle: monomeric mouse apoai(1-216)

Links to external resources
Added to library: Thu Jan 10 11:25:34 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D E P Q S Q W D K V K D F A N V Y V D A V K D S G R D Y V S Q F E S S S L G Q Q L N L N L L E N W D T L G S T V S Q L Q E R L G P L T R D F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T T T
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence W D N L E K E T D W V R Q E M N K D L E E V K Q K V Q P Y L D E F Q K K W K E D V E L Y R Q K A S P Q G A E L Q E S A R Q K L Q E L Q G R L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T
T S
S
S S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S P V A E E F R D R M R T H V D S L R T Q L A P H S E Q M R E S L A Q R L A E L K S N P T L N E Y H S S A K S H L K S L G E K A R P A L E D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T
S S S T S
T T T

. . . . . .

Sequence L R H S L M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	E	P	Q	S	Q	W	D	K	V	K	D	F	A	N	V	Y	V	D	A	V	K	D	S	G	R	D	Y	V	S	Q	F	E	S	S	S	L	G	Q	Q	L	N	L	N	L	L	E	N	W	D	T	L	G	S	T	V	S	Q	L	Q	E	R	L	G	P	L	T	R	D	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S																																											T	T	T	T						S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	W	D	N	L	E	K	E	T	D	W	V	R	Q	E	M	N	K	D	L	E	E	V	K	Q	K	V	Q	P	Y	L	D	E	F	Q	K	K	W	K	E	D	V	E	L	Y	R	Q	K	A	S	P	Q	G	A	E	L	Q	E	S	A	R	Q	K	L	Q	E	L	Q	G	R	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																										T	T	T	T																			T	S													S			S	S			S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	P	V	A	E	E	F	R	D	R	M	R	T	H	V	D	S	L	R	T	Q	L	A	P	H	S	E	Q	M	R	E	S	L	A	Q	R	L	A	E	L	K	S	N	P	T	L	N	E	Y	H	S	S	A	K	S	H	L	K	S	L	G	E	K	A	R	P	A	L	E	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	T																																																			S	S	S								T	S		T	T	T
	.	.	.	.	.	.
Sequence	L	R	H	S	L	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S