Fold library entry viewer: c2jbuB_

Added to library: Tue Mar 16 14:18:11 2010
Links to external resources

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	A	I	K	R	I	G	N	H	I	T	K	S	P	E	D	K	R	E	Y	R	G	L	E	L	A	N	G	I	K	V	L	L	I	S	D	P	T	T	D	K	S	S	A	A	L	D	V	H	I	G	S	L	S	D	P	P	N	I	A	G	L	S	H	F	C	Q	H	M	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S										T	T											T	T	S									T	T		S									S			G	G	G			T	T	S	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	F	L	G	T	K	K	Y	P	K	E	N	E	Y	S	Q	F	L	S	E	H	A	G	S	S	N	A	F	T	S	G	E	H	T	N	Y	Y	F	D	V	S	H	E	H	L	E	G	A	L	D	R	F	A	Q	F	F	L	C	P	L	F	D	E	S	C	K	D	R	E	V	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T		B	S	S			S	T	T						T	G	G	G	T									S	S										G	G	G										T	T	T	T		B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	V	D	S	E	H	E	K	N	V	M	N	D	A	W	R	L	F	Q	L	E	K	A	T	G	N	P	K	H	P	F	S	K	F	G	T	G	N	K	Y	T	L	E	T	R	P	N	Q	E	G	I	D	V	R	Q	E	L	L	K	F	H	S	A	Y	Y	S	S	N	L	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T													T	S		T	T	S	G	G	G				S							T							T																	G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	A	V	C	V	L	G	R	E	S	L	D	D	L	T	N	L	V	V	K	L	F	S	E	V	E	N	K	N	V	P	L	P	E	F	P	E	H	P	F	Q	E	E	H	L	K	Q	L	Y	K	I	V	P	I	K	D	I	R	N	L	Y	V	T	F	P	I	P	D	L	Q	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	S														T	T	S												S		S			G	G	G	S	S								S	S	S														G	G
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	Y	Y	K	S	N	P	G	H	Y	L	G	H	L	I	G	H	E	G	P	G	S	L	L	S	E	L	K	S	K	G	W	V	N	T	L	V	G	G	Q	K	E	G	A	R	G	F	M	F	F	I	I	N	V	D	L	T	E	E	G	L	L	H	V	E	D	I	I	L	H	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G	T											T			S	T	T									T	T			S											T	T																T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	F	Q	Y	I	Q	K	L	R	A	E	G	P	Q	E	W	V	F	Q	E	C	K	D	L	N	A	V	A	F	R	F	K	D	K	E	R	P	R	G	Y	T	S	K	I	A	G	I	L	H	Y	Y	P	L	E	E	V	L	T	A	E	Y	L	L	E	E	F	R	P	D	L	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T																																					T	T	T	S		T	T	T					T	T
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	E	M	V	L	D	K	L	R	P	E	N	V	R	V	A	I	V	S	K	S	F	E	G	K	T	D	R	T	E	E	W	Y	G	T	Q	Y	K	Q	E	A	I	P	D	E	V	I	K	K	W	Q	N	A	D	L	N	G	K	F	K	L	P	T	K	N	E	F	I	P	T	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T		S	G	G	G								G	G	G	T	T							T	T	T																			T					T	T								T	T
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	F	E	I	L	P	L	E	K	E	A	T	P	Y	P	A	L	I	K	D	T	A	M	S	K	L	W	F	K	Q	D	D	K	F	F	L	P	K	A	C	L	N	F	E	F	F	S	P	F	A	Y	V	D	P	L	H	C	N	M	A	Y	L	Y	L	E	L	L	K	D	S	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T			S	S								S	S										S				S											G	G	G	T	S	S
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	N	E	Y	A	Y	A	A	E	L	A	G	L	S	Y	D	L	Q	N	T	I	Y	G	M	Y	L	S	V	K	G	Y	N	D	K	Q	P	I	L	L	K	K	I	I	E	K	M	A	T	F	E	I	D	E	K	R	F	E	I	I	K	E	A	Y	M	R	S	L	N	N	F	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T									S	S										S	T	T													T	S																					G	G	G
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	A	E	Q	P	H	Q	H	A	M	Y	Y	L	R	L	L	M	T	E	V	A	W	T	K	D	E	L	K	E	A	L	D	D	V	T	L	P	R	L	K	A	F	I	P	Q	L	L	S	R	L	H	I	E	A	L	L	H	G	N	I	T	K	Q	A	A	L	G	I	M	Q	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	S															B	S	S																																							S
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	V	E	D	T	L	I	E	H	A	H	T	K	P	L	L	P	S	Q	L	V	R	Y	R	E	V	Q	L	P	D	R	G	W	F	V	Y	Q	Q	R	N	E	V	H	N	N	C	G	I	E	I	Y	Y	Q	T	D	M	Q	S	T	S	E	N	M	F	L	E	L	F	C	Q	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T	T	T						B	B				T	T										S	S		S	S
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	I	S	E	P	C	F	N	T	L	R	T	K	E	Q	L	G	Y	I	V	F	S	G	P	R	R	A	N	G	I	Q	G	L	R	F	I	I	Q	S	E	K	P	P	H	Y	L	E	S	R	V	E	A	F	L	I	T	M	E	K	S	I	E	D	M	T	E	E	A	F	Q	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T	T	T				S										T	T											S	S																							S
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	H	I	Q	A	L	A	I	R	R	L	D	K	P	K	K	L	S	A	E	C	A	K	Y	W	G	E	I	I	S	Q	Q	Y	N	F	D	R	D	N	T	E	V	A	Y	L	K	T	L	T	K	E	D	I	I	K	F	Y	K	E	M	L	A	V	D	A	P	R	R	H	K	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														S	S														T	T				T	T										T	T														T	S	T	T		T	T
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960
Sequence	S	V	H	V	L	A	R	E	M	D	S	C	P	V	S	Q	A	P	A	L	P	Q	P	E	V	I	Q	N	M	T	E	F	K	R	G	L	P	L	F	P	L	V	K	P	H	I	N	F	M	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	S																											T	S		B

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PDB structure

FASTA sequence

Hidden Markov model

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