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Protein Homology/analogY Recognition Engine V 2.2 |
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Fold library id | PDB Header | Molecule | Title |
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c2iykB_ | PDB header: hydrolase | Chain: B: PDB Molecule: regulator of nonsense transcripts 1; | PDBTitle: crystal structure of the upf2-interacting domain of2 nonsense mediated mrna decay factor upf1 |
Added to library: Tue Mar 16 13:20:59 2010 | |
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Links to external resources | |
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  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 |
Sequence | L | P | I | H | A | C | S | Y | C | G | I | H | D | P | A | C | V | V | Y | C | N | T | S | K | K | W | F | C | N | G | R | G | N | T | S | G | S | H | I | V | N | H | L | V | R | A | K | C | K | E | V | T | L | H | K | D | G | P | L | G | E | T | V | L | E | C | Y | N | C | G |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | T | T | S | T | T | T | T | T | T | ![]() | ![]() | ![]() | ![]() | T | T | T | T | ![]() | ![]() | ![]() | ![]() | S | T | T | S | S | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | ![]() | ![]() | ![]() | T | T | S | T | T | S | B | T | T | T |   | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 |
Sequence | C | R | N | V | F | L | L | G | F | I | P | A | K | A | D | S | V | V | V | L | L | C | R | Q | P | C | A | S | Q | S | S | L | K | D | I | N | W | D | S | S | Q | W | Q | P | L | I | Q | D | R | C | F | L | S | W | L | V | K | I | P | S | E | Q | E | Q | L | R | A | R | Q | I |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | T | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | T | T | T | S | T | T | T | S | T | T | T | G | G | G | ![]() | ![]() | S | ![]() | ![]() | T | T | ![]() | ![]() | T | T | T | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | S |   | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . |
Sequence | T | A | Q | Q | I | N | K | L | E | E | L | W | K | E | N | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T |
Download: | PDB structure | FASTA sequence |
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