PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2i2vG_

Fold library id	PDB Header	Molecule	Title
c2i2vG_	PDB header: ribosome	Chain: G: PDB Molecule: 50s ribosomal protein l6;	PDBTitle: crystal structure of ribosome with messenger rna and the2 anticodon stem-loop of p-site trna. this file contains the3 50s subunit of one 70s ribosome. the entire crystal4 structure contains two 70s ribosomes and is described in5 remark 400.

Links to external resources
Added to library: Tue Mar 16 13:56:20 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S R V A K A P V V V P A G V D V K I N G Q V I T I K G K N G E L T R T L N D A V E V K H A D N T L T F G P R D G Y A D G W A Q A G T A R A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G
S S
T T
S S
S S
B
T T T S
B
S S
T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L N S M V I G V T E G F T K K L Q L V G V G Y R A A V K G N V I N L S L G F S H P V D H Q L P A G I T A E C P T Q T E I V L K G A D K Q V I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
S S S
S S S B
S S
S S
B
T T B
B
S S S S B
B S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . .

Sequence G Q V A A D L R A Y R R P E P Y K G K G V R Y A D E V V R T K E A K K K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
T T T
S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	R	V	A	K	A	P	V	V	V	P	A	G	V	D	V	K	I	N	G	Q	V	I	T	I	K	G	K	N	G	E	L	T	R	T	L	N	D	A	V	E	V	K	H	A	D	N	T	L	T	F	G	P	R	D	G	Y	A	D	G	W	A	Q	A	G	T	A	R	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G	G							S	S							T	T							S	S									S	S				B		T	T	T	S		B					S	S		T	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	N	S	M	V	I	G	V	T	E	G	F	T	K	K	L	Q	L	V	G	V	G	Y	R	A	A	V	K	G	N	V	I	N	L	S	L	G	F	S	H	P	V	D	H	Q	L	P	A	G	I	T	A	E	C	P	T	Q	T	E	I	V	L	K	G	A	D	K	Q	V	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	T										S	S	S							S	S	S	B				S	S		S	S				B				T	T	B			B		S	S	S	S			B			B	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Sequence	G	Q	V	A	A	D	L	R	A	Y	R	R	P	E	P	Y	K	G	K	G	V	R	Y	A	D	E	V	V	R	T	K	E	A	K	K	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T	T				T	T	T			S				T	T