PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2ghpC_

Fold library id	PDB Header	Molecule	Title
c2ghpC_	PDB header: rna binding protein	Chain: C: PDB Molecule: u4/u6 snrna-associated splicing factor prp24;	PDBTitle: crystal structure of the n-terminal 3 rna binding domains2 of the yeast splicing factor prp24

Links to external resources
Added to library: Tue Mar 16 14:11:42 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T T V L V K N L P K S Y N Q N K V Y K Y F K H C G P I I H V D V A D S L K K N F R F A R I E F A R Y D G A L A A I T K T H K V V G Q N E I I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
G G G S
T T S S S S S T T T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V S H L T E C T L W X T N F P P S Y T Q R N I R D L L Q D I N V V A L S I R L P R R F A Y I D V T S K E D A R Y C V E K L N G L K I E G Y T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
T T
S S T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L V T K V S N P L T L E G R E I X I R N L S T E L L D E N L L R E S F E G F G S I E K I N I P A G Q K F N N C C A F X V F E N K D S A E R A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
T T T
G G G S
S
S S

. . . . . . . . . 220 . . . . . . . . . 230 . .

Sequence L Q X N R S L L G N R E I S V S L A D K K P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G T T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	T	V	L	V	K	N	L	P	K	S	Y	N	Q	N	K	V	Y	K	Y	F	K	H	C	G	P	I	I	H	V	D	V	A	D	S	L	K	K	N	F	R	F	A	R	I	E	F	A	R	Y	D	G	A	L	A	A	I	T	K	T	H	K	V	V	G	Q	N	E	I	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T											G	G	G	S											T	T	S	S	S								S	S									T	T	T	T				T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	S	H	L	T	E	C	T	L	W	X	T	N	F	P	P	S	Y	T	Q	R	N	I	R	D	L	L	Q	D	I	N	V	V	A	L	S	I	R	L	P	R	R	F	A	Y	I	D	V	T	S	K	E	D	A	R	Y	C	V	E	K	L	N	G	L	K	I	E	G	Y	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S										T	T													T	T																		S	S												T	T				T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	V	T	K	V	S	N	P	L	T	L	E	G	R	E	I	X	I	R	N	L	S	T	E	L	L	D	E	N	L	L	R	E	S	F	E	G	F	G	S	I	E	K	I	N	I	P	A	G	Q	K	F	N	N	C	C	A	F	X	V	F	E	N	K	D	S	A	E	R	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T	T									T	T	T											G	G	G	S									S														S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Sequence	L	Q	X	N	R	S	L	L	G	N	R	E	I	S	V	S	L	A	D	K	K	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G	T	T				T	T