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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2fwoA_

Fold library idPDB HeaderMoleculeTitle
c2fwoA_PDB header: immune system/viral proteinChain: A: PDB Molecule: h-2 class i histocompatibility antigen, k-dPDBTitle: mhc class i h-2kd heavy chain in complex with beta-2 2microglobulin and peptide derived from influenza3 nucleoprotein


Added to library: Tue Mar 16 14:07:44 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GPHSLRYFVTAVSRPGLGEPRFIAVGYVDDTQFVRFDSDADNPRFEPRAPWMEQEGPEYWEEQTQRAKSD
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Known secondary structure (DSSP)



TTSSS
TTTTSSS



SGGGTTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence EQWFRVSLRTAQRYYNQSKGGSHTFQRMFGCDVGSDWRLLRGYQQFAYDGRDYIALNEDLKTWTAADTAA
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Known secondary structure (DSSP) TT

TTS


TTSSTT
TTSS
SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence LITRRKWEQAGDAEYYRAYLEGECVEWLRRYLELGNETLLRTDSPKAHVTYHPRSQVDVTLRCWALGFYP
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Known secondary structure (DSSP) TTTTS

B


SSSBS
 .........220.........230.........240.........250.........260.........270.....
Sequence ADITLTWQLNGEDLTQDMELVETRPAGDGTFQKWAAVVVPLGKEQNYTCHVHHKGLPEPLTLRWK
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Known secondary structure (DSSP) S

TT
TTTS



SSS
TT
GGG
SS
SS




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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