PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c2f8xK_

Fold library id	PDB Header	Molecule	Title
c2f8xK_	PDB header: transcription/dna	Chain: K: PDB Molecule: neurogenic locus notch homolog protein 1;	PDBTitle: crystal structure of activated notch, csl and maml on hes-12 promoter dna sequence

Links to external resources
Added to library: Tue Mar 16 12:09:09 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T P L M I A S C S A V I S D F I Y S L H N Q T D R T G E T A L H L A A R Y S R S D A A K R L L E A S A D A N I Q D N M G R T P L H A A V S A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S S
T T
T T
T T
T T S
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D A Q G V F Q I L I R N R A T D L D A R M H D G T T P L I L A A R L A V E G M L E D L I N S H A D V N A V D D L G K S A L H W A A A V N N V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S S
T T
T T
T T
T T T T
S S
T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D A A V V L L K N G A N K D M Q N N R E E T P L F L A A R E G S Y E T A K V L L D H F A N R D I T D H M D R L P R D I A Q E R M H H D I V R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
T T
T
T T
T T
T T S
T T

. . . . . . . .

Sequence L L D E Y N L V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S

Download: PDB structure FASTA sequence
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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	P	L	M	I	A	S	C	S	A	V	I	S	D	F	I	Y	S	L	H	N	Q	T	D	R	T	G	E	T	A	L	H	L	A	A	R	Y	S	R	S	D	A	A	K	R	L	L	E	A	S	A	D	A	N	I	Q	D	N	M	G	R	T	P	L	H	A	A	V	S	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				S				S	S	S											T	T											T	T			T	T				T	T	S										T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	A	Q	G	V	F	Q	I	L	I	R	N	R	A	T	D	L	D	A	R	M	H	D	G	T	T	P	L	I	L	A	A	R	L	A	V	E	G	M	L	E	D	L	I	N	S	H	A	D	V	N	A	V	D	D	L	G	K	S	A	L	H	W	A	A	A	V	N	N	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T											S	S	S			T	T				T	T											T	T		T	T								T	T			S	S				T	T											T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	A	A	V	V	L	L	K	N	G	A	N	K	D	M	Q	N	N	R	E	E	T	P	L	F	L	A	A	R	E	G	S	Y	E	T	A	K	V	L	L	D	H	F	A	N	R	D	I	T	D	H	M	D	R	L	P	R	D	I	A	Q	E	R	M	H	H	D	I	V	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T			T	T				T	T												T											T	T			T	T				T	T	S										T	T
	.	.	.	.	.	.	.	.
Sequence	L	L	D	E	Y	N	L	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S