PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2e3rB_

Fold library id	PDB Header	Molecule	Title
c2e3rB_	PDB header: lipid transport	Chain: B: PDB Molecule: lipid-transfer protein cert;	PDBTitle: crystal structure of cert start domain in complex with c18-2 ceramide (p1)

Links to external resources
Added to library: Tue Mar 16 13:53:52 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence H R F V Q K V E E M V Q N H M T Y S L Q D G D A N W Q L V V E E G E M K V Y R R E V E E N G I V L D P L K A T H A V K G V T G H E V C N Y F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T
T T T T
T T
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence W N V D V R N D W E T T I E N F H V V E T L A D N A I I I Y Q T H K R V W P A S Q R D V L Y L S V I R K I P A L T E N D P E T W I V C N F S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
S T T
T T S
S S T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V D H D S A P L N N R C V R A K I N V A M I C Q T L V S E I S R D N I L C K I T Y V A N V N P G G W A P A S V L R A V A K R E Y P K F L K R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S S S
G G G
S S

. . . . . . . . . 220 . . . . . .

Sequence F T S Y V Q E K T A G K P I L F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	H	R	F	V	Q	K	V	E	E	M	V	Q	N	H	M	T	Y	S	L	Q	D	G	D	A	N	W	Q	L	V	V	E	E	G	E	M	K	V	Y	R	R	E	V	E	E	N	G	I	V	L	D	P	L	K	A	T	H	A	V	K	G	V	T	G	H	E	V	C	N	Y	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T															T	T					T	T								T	T											T	T														T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	W	N	V	D	V	R	N	D	W	E	T	T	I	E	N	F	H	V	V	E	T	L	A	D	N	A	I	I	I	Y	Q	T	H	K	R	V	W	P	A	S	Q	R	D	V	L	Y	L	S	V	I	R	K	I	P	A	L	T	E	N	D	P	E	T	W	I	V	C	N	F	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			G	G	G							S												T	T												T	T	S																	S	S	T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	D	H	D	S	A	P	L	N	N	R	C	V	R	A	K	I	N	V	A	M	I	C	Q	T	L	V	S	E	I	S	R	D	N	I	L	C	K	I	T	Y	V	A	N	V	N	P	G	G	W	A	P	A	S	V	L	R	A	V	A	K	R	E	Y	P	K	F	L	K	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	S				S	S	S																				G	G	G														S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Sequence	F	T	S	Y	V	Q	E	K	T	A	G	K	P	I	L	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T	S