PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2dytA_

Fold library id	PDB Header	Molecule	Title
c2dytA_	PDB header: ligase	Chain: A: PDB Molecule: autophagy-related protein 3;	PDBTitle: the crystal structure of saccharomyces cerevisiae atg3

Links to external resources
Added to library: Tue Mar 16 13:00:57 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T F L T T G Q I T P E E F V Q A G D Y L C H M F P T W K W N E E S S D I S Y R D F L P K N K Q F L I I R K V P C D K R A E Q C I D D I D E L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
T T B
T T S
T T
S
S
T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I Q D M E I K M A Q E R Y Y D L Y I A Y S T S Y R V P K M Y I V G F N S N G S P L S P E Q M F E D I S A D Y R T K T A T I E K L P F Y K N S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T T
B
T T S
T T T
T T B S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V L S V S I H P C K H A N V M K I L L D K V R V V R Q R R R K E L Q E E Q E L D G V G D W D S L R V D Q Y L I V F L K F I T S V T P S I Q H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S S
T T
T T
G G G S T T B

. . .

Sequence D Y T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	F	L	T	T	G	Q	I	T	P	E	E	F	V	Q	A	G	D	Y	L	C	H	M	F	P	T	W	K	W	N	E	E	S	S	D	I	S	Y	R	D	F	L	P	K	N	K	Q	F	L	I	I	R	K	V	P	C	D	K	R	A	E	Q	C	I	D	D	I	D	E	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S																			T	T								T	T	B				T	T	S		T	T		S											S		T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	Q	D	M	E	I	K	M	A	Q	E	R	Y	Y	D	L	Y	I	A	Y	S	T	S	Y	R	V	P	K	M	Y	I	V	G	F	N	S	N	G	S	P	L	S	P	E	Q	M	F	E	D	I	S	A	D	Y	R	T	K	T	A	T	I	E	K	L	P	F	Y	K	N	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																						T	T	T	T											T	T			B								T	T	S		T	T	T											T	T	B	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	L	S	V	S	I	H	P	C	K	H	A	N	V	M	K	I	L	L	D	K	V	R	V	V	R	Q	R	R	R	K	E	L	Q	E	E	Q	E	L	D	G	V	G	D	W	D	S	L	R	V	D	Q	Y	L	I	V	F	L	K	F	I	T	S	V	T	P	S	I	Q	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S		S	S	S																												T	T		T	T						G	G	G													S	T	T	B
	.	.	.
Sequence	D	Y	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T