PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2dlaB_

Fold library id	PDB Header	Molecule	Title
c2dlaB_	PDB header: replication	Chain: B: PDB Molecule: 397aa long hypothetical protein;	PDBTitle: primase large subunit amino terminal domain from pyrococcus2 horikoshii

Links to external resources
Added to library: Tue Mar 16 13:14:40 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M M I M L D P F S E K A K E L L K G F G S I N D F M D A I P K I V S V D D V I E R I R V V K N E K L I D K F L D Q D N V M D L A Q F Y A L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T S T T
S G G G T
G G G T
T T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G A L S Y S P Y G I E L E L V K K A N L I I Y S E R L K R K K E I K P E E I S I D V S T A I E F P T E D V R K I E R V Y G K I P E Y T M K I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G S S S S
S S
G G G S S S
B
G G G S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S D F L D L V P D E K L A N Y Y I Y E G R V Y L K R E D L I R I W S K A F E R N V E R G V N M L Y E I R D E L P E F Y R K V L G E I Q A F A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
G G G S
T T
G G G S

. . . .

Sequence E E E F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	M	I	M	L	D	P	F	S	E	K	A	K	E	L	L	K	G	F	G	S	I	N	D	F	M	D	A	I	P	K	I	V	S	V	D	D	V	I	E	R	I	R	V	V	K	N	E	K	L	I	D	K	F	L	D	Q	D	N	V	M	D	L	A	Q	F	Y	A	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S		T	T	S									T	T		S								G	G	G	T											G	G	G	T		T	T	T	T					T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	A	L	S	Y	S	P	Y	G	I	E	L	E	L	V	K	K	A	N	L	I	I	Y	S	E	R	L	K	R	K	K	E	I	K	P	E	E	I	S	I	D	V	S	T	A	I	E	F	P	T	E	D	V	R	K	I	E	R	V	Y	G	K	I	P	E	Y	T	M	K	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			G	G	G	S	S	S	S																						S	S			G	G	G	S	S	S			B							G	G	G									S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	D	F	L	D	L	V	P	D	E	K	L	A	N	Y	Y	I	Y	E	G	R	V	Y	L	K	R	E	D	L	I	R	I	W	S	K	A	F	E	R	N	V	E	R	G	V	N	M	L	Y	E	I	R	D	E	L	P	E	F	Y	R	K	V	L	G	E	I	Q	A	F	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	S		G	G	G	S				T	T																																G	G	G	S
	.	.	.	.
Sequence	E	E	E	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)