Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2dhsA_

Fold library idPDB HeaderMoleculeTitle
c2dhsA_PDB header: rna binding proteinChain: A: PDB Molecule: cug triplet repeat rna-binding protein 1;PDBTitle: solution structure of nucleic acid binding protein cugbp1ab2 and its binding study with dna and rna


Added to library: Tue Mar 16 13:48:24 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRK
Predicted secondary structure








































SS confidence





































































Known secondary structure (DSSP)




S
SS




S
S



S
TTS

STT
SSS



S
 .........80.........90.........100.........110.........120.........130.........140
Sequence AALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRIL
Predicted secondary structure



















































SS confidence





































































Known secondary structure (DSSP) SSSS




SS



GGG
S
GGGGS




TT

TTS
 .........150.........160.........170.........180.......
Sequence RGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD
Predicted secondary structure




















SS confidence














































Known secondary structure (DSSP) TTTSSTTT

TTTT







Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D