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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2cy7A_

Fold library idPDB HeaderMoleculeTitle
c2cy7A_PDB header: hydrolaseChain: A: PDB Molecule: cysteine protease apg4b;PDBTitle: the crystal structure of human atg4b


Added to library: Tue Mar 16 12:40:03 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TLTYDTLRFAEFEDFPETSEPVWILGRKYSIFTEKDEILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGC
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Known secondary structure (DSSP)

SS
GGGG








SS
TT
TTT
SB


S


TTTTS
SB
TTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence MLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYG
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Known secondary structure (DSSP) T
TT



TTS


TTSSSTTSTT
TTT

TT



 .........150.........160.........170.........180.........190.........200.........210
Sequence PNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRTSVPCSPWRPLVLLIPLRLGLTDINEAYVE
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Known secondary structure (DSSP) TT
TTT



TTBSS




B



SSS

GGG
 .........220.........230.........240.........250.........260.........270.........280
Sequence TLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEGCFIPDESFHCQHPPCRMSIAELD
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Known secondary structure (DSSP) TSSTT
STT

TT


S








GGGB

S

GGGS
 .........290.........300.........310.........320.........330...
Sequence PSIAVGFFCKTEDDFNDWCQQVKKLSLLPMFELVEQQPDVLNLSLDSSDVERL
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Known secondary structure (DSSP) SSS


SS












Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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