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Protein Homology/analogY Recognition Engine V 2.2 |
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Fold library id | PDB Header | Molecule | Title |
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c2c8iB_ | PDB header: virus/receptor | Chain: B: PDB Molecule: echovirus 11 coat protein vp2; | PDBTitle: complex of echovirus type 12 with domains 1, 2, 3 and 4 of2 its receptor decay accelerating factor (cd55) by cryo3 electron microscopy at 16 a |
Added to library: Tue Mar 16 12:55:54 2010 | |
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Links to external resources | |
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  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 |
Sequence | S | D | R | V | R | S | I | T | L | G | N | S | T | I | T | T | Q | E | S | A | N | V | V | V | G | Y | G | R | W | P | E | Y | L | R | D | D | E | A | T | A | E | D | Q | P | T | Q | P | D | V | A | T | C | R | F | Y | T | L | E | S | V | T | W | E | K | D | S | P | G | W | W |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | S | S | ![]() | ![]() | B | T | T | B | S | T | T | S | B | T | T | T | S | S | S | ![]() | ![]() | ![]() | ![]() | T | T | ![]() | ![]() |   | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 |
Sequence | W | K | F | P | D | A | L | K | D | M | G | L | F | G | Q | N | M | Y | Y | H | Y | L | G | R | A | G | Y | T | I | H | V | Q | C | N | A | S | K | F | H | Q | G | C | L | L | V | V | C | V | P | E | A | E | M | G | C | S | T | V | D | G | T | V | N | E | H | G | L | S | E | G |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | ![]() | ![]() | S | T | T | T | T | T | S | S | T | T | T | T | ![]() | ![]() | ![]() | ![]() | T | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | S | B | S | S | S | S | S | T | T | T | T | S |   | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 |
Sequence | E | T | A | K | K | F | S | A | T | G | T | N | G | T | N | T | V | Q | S | I | V | T | N | A | G | M | G | V | G | V | G | N | L | T | I | F | P | H | Q | W | I | N | L | R | T | N | N | C | A | T | I | V | M | P | Y | I | N | N | V | P | M | D | N | M | F | R | H | H | N | F |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | S | S | ![]() | ![]() | B | S | S | S | T | T | S | B | B | T | T | T | T | S | S | S | S | G | G | G | G | G | G | S | S | ![]() | ![]() | ![]() | T | T | T | S | ![]() | ![]() | ![]() | ![]() | ![]() | S | S | S | B | T | T | T | ![]() |   | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . |
Sequence | T | L | M | I | I | P | F | V | P | L | N | Y | S | S | D | F | S | T | Y | V | P | I | T | V | T | V | A | P | M | C | A | E | Y | N | G | L | R | L | S | T | A | L | ||||||||||||||||||||||||||||
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | S | S | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | S |
Download: | PDB structure | FASTA sequence |
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