PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1zp2A_

Fold library id	PDB Header	Molecule	Title
c1zp2A_	PDB header: transcription/cell cycle	Chain: A: PDB Molecule: rna polymerase ii holoenzyme cyclin-like subunit;	PDBTitle: structure of the mediator subunit cyclin c

Links to external resources
Added to library: Tue Mar 16 12:21:47 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence W A S S Q L T Q L F L S T D L E S L E P T C L S K D T I Y Q W K V V Q T F G D R L R L R Q R V L A T A I V L L R R Y M L K K N E E K G F S L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G T G G G S
S S
T T S S
S
T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E A L V A T C I Y L S C K V E E C P V H I R T I C N E A N D L W S L K V K L S R S N I S E I E F E I I S V L D A F L I V H H P Y T S L E Q A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
S S
T T T
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence F H D G I I N Q K Q L E F A W S I V N D S Y A S S L C L M A H P H Q L A Y A A L L I S C C N D E N T I P K L L D L I K S T D A F K V I L C V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S
T T T T G G G T S
T S
T T

. . . . . . . . . 220 . . . . . . .

Sequence Q R I I S I Y Y F E D I E A A A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S S T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	W	A	S	S	Q	L	T	Q	L	F	L	S	T	D	L	E	S	L	E	P	T	C	L	S	K	D	T	I	Y	Q	W	K	V	V	Q	T	F	G	D	R	L	R	L	R	Q	R	V	L	A	T	A	I	V	L	L	R	R	Y	M	L	K	K	N	E	E	K	G	F	S	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				G	G	G	T	G	G	G	S		S	S		T	T	S	S				S																		T	T																						S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	A	L	V	A	T	C	I	Y	L	S	C	K	V	E	E	C	P	V	H	I	R	T	I	C	N	E	A	N	D	L	W	S	L	K	V	K	L	S	R	S	N	I	S	E	I	E	F	E	I	I	S	V	L	D	A	F	L	I	V	H	H	P	Y	T	S	L	E	Q	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	T														T	T				S	S																		T	T	T							T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	F	H	D	G	I	I	N	Q	K	Q	L	E	F	A	W	S	I	V	N	D	S	Y	A	S	S	L	C	L	M	A	H	P	H	Q	L	A	Y	A	A	L	L	I	S	C	C	N	D	E	N	T	I	P	K	L	L	D	L	I	K	S	T	D	A	F	K	V	I	L	C	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	S	S																T	T	T	T	G	G	G	T	S															T	S		T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Sequence	Q	R	I	I	S	I	Y	Y	F	E	D	I	E	A	A	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	S	S	S					T