PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1yhpA_

Fold library id	PDB Header	Molecule	Title
c1yhpA_	PDB header: cell adhesion	Chain: A: PDB Molecule: calcium-dependent cell adhesion molecule-1;	PDBTitle: solution structure of ca2+-free ddcad-1

Links to external resources
Added to library: Tue Mar 16 14:00:30 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S V D A N K V K F F F G K N C T G E S F E Y N K G E T V R F N N G D K W N D K F M S C L V G S N V R C N I W E H N E I D T P T P G K F Q E L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S T T T
S
S S
T T
T
S S
S
S S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A Q G S T N N D L T S I N G L S K F Q V L P G A F Q W A V D V K I V N K V N S T A G S Y E M T I T P Y Q V D K V A C K D G D D F V Q L P I P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
G G G
S
S
S S
S S S
S S
T T T T
S S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K L T P P D S E I V S H L T V R Q T H T P Y D Y V V N G S V Y F K Y S P T T G Q V T V I K K D E T F P K N M T V T Q D D N T S F I F N L N S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T S
S S T T
T T T T
T T T
S S T T

. .

Sequence E K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	V	D	A	N	K	V	K	F	F	F	G	K	N	C	T	G	E	S	F	E	Y	N	K	G	E	T	V	R	F	N	N	G	D	K	W	N	D	K	F	M	S	C	L	V	G	S	N	V	R	C	N	I	W	E	H	N	E	I	D	T	P	T	P	G	K	F	Q	E	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T						S	S	T	T	T		S							S	S							T	T						T								S	S							S				S	S		S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	Q	G	S	T	N	N	D	L	T	S	I	N	G	L	S	K	F	Q	V	L	P	G	A	F	Q	W	A	V	D	V	K	I	V	N	K	V	N	S	T	A	G	S	Y	E	M	T	I	T	P	Y	Q	V	D	K	V	A	C	K	D	G	D	D	F	V	Q	L	P	I	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S				S			G	G	G		S		S							S	S		S										S	S		S	S		T	T								T	T								S	S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	L	T	P	P	D	S	E	I	V	S	H	L	T	V	R	Q	T	H	T	P	Y	D	Y	V	V	N	G	S	V	Y	F	K	Y	S	P	T	T	G	Q	V	T	V	I	K	K	D	E	T	F	P	K	N	M	T	V	T	Q	D	D	N	T	S	F	I	F	N	L	N	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S	T	T	S											S	S	T	T															T	T	T	T								T	T	T			S	S								T	T
	.	.
Sequence	E	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)