PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1yf5L_

Fold library id	PDB Header	Molecule	Title
c1yf5L_	PDB header: transport protein	Chain: L: PDB Molecule: general secretion pathway protein l;	PDBTitle: cyto-epsl: the cytoplasmic domain of epsl, an inner2 membrane component of the type ii secretion system of3 vibrio cholerae

Links to external resources
Added to library: Tue Mar 16 14:30:38 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S E F L T V R L S S Q K E A D I P W L V W S A E Q Q E V I A S G Q V A G W E A L H E I E S Y A D Q R S V V V L L A A S D L I L T S V E I P P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T S T T T T S G G G G G G G T T S
G G G S
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G A S R Q L E N X L P Y L L E D E I A Q D V E D V H F C V L S K G R E T A D V V G V D R L W L R A C L D H L K A C G F D V K R V L P D V L A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
G G G T G G G
S S
G G G
S S T T
G G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I P R P E H G L A A L Q L G D E W L V R K S T T Q G X A V D A Q W L S L L A A S D W V Q N E G E Y L P L Q A L T P L P E L S L A E T Q E W R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S S T T
S S S
G G G S G G G T T
S S
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . .

Sequence Y E P S G L V X Q L L T Q E A L T S K F N L L T G S F K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B
S
S
G G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	E	F	L	T	V	R	L	S	S	Q	K	E	A	D	I	P	W	L	V	W	S	A	E	Q	Q	E	V	I	A	S	G	Q	V	A	G	W	E	A	L	H	E	I	E	S	Y	A	D	Q	R	S	V	V	V	L	L	A	A	S	D	L	I	L	T	S	V	E	I	P	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S		T	T	S									T	T	T	T										S	G	G	G	G	G	G	G					T	T	S								G	G	G	S									T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	A	S	R	Q	L	E	N	X	L	P	Y	L	L	E	D	E	I	A	Q	D	V	E	D	V	H	F	C	V	L	S	K	G	R	E	T	A	D	V	V	G	V	D	R	L	W	L	R	A	C	L	D	H	L	K	A	C	G	F	D	V	K	R	V	L	P	D	V	L	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T		G	G	G									T	G	G	G		S	S		G	G	G										S	S																						T	T									G	G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	P	R	P	E	H	G	L	A	A	L	Q	L	G	D	E	W	L	V	R	K	S	T	T	Q	G	X	A	V	D	A	Q	W	L	S	L	L	A	A	S	D	W	V	Q	N	E	G	E	Y	L	P	L	Q	A	L	T	P	L	P	E	L	S	L	A	E	T	Q	E	W	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S				S	S	S							T	T							S	S	S							G	G	G							S	G	G	G			T	T								S	S									T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Sequence	Y	E	P	S	G	L	V	X	Q	L	L	T	Q	E	A	L	T	S	K	F	N	L	L	T	G	S	F	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	B				S																	S			G	G	G