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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c1w8kA_

Fold library idPDB HeaderMoleculeTitle
c1w8kA_PDB header: antigenChain: A: PDB Molecule: apical membrane antigen 1;PDBTitle: crystal structure of apical membrane antigen 1 from2 plasmodium vivax


Added to library: Wed Jan 9 19:34:58 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PTVERSTRMSNPWKAFMEKYDIERTHSSGVRVDLGEDAEVENAKYRIPAGRCPVFGKGIVIENSDVSFLR
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Known secondary structure (DSSP)






TTGGG
T
S
SSB


SSS



SS
TTT



TTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence PVATGGFAFPNANDHISPMTLANLKERYKDNVEMMKLNDIALCRTHAASFVSNYRHPAVYDEKEKTCHML
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Known secondary structure (DSSP) B




SB

STTSSSSSTTT
TTGGGS
T







TTTTB
 .........150.........160.........170.........180.........190.........200.........210
Sequence YLSAQENMYCSDAVFCFKPDKDESFENLVYLSKNVRNDWDKKCPRKNLGNAKFGLWVDGNCEEIPYVKEV
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Known secondary structure (DSSP) S




B





S


GGGTT
TT

TTS

STT

SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence EAEDLRECNRIVFGASASDQPTFKSKGRGFNWANFDSVKKKCYIFNTKPTCLINDKNFIATTALSHPQEV
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Known secondary structure (DSSP)
SSS
B






TT
SS
TTTTSS


TTS
SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence DLEFPCSIYKDEIEREIKKQERIVLPRIFISNDKESIKCPCEPERISQSTCNFYVCNCVEKRAEIKENNQ
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Known secondary structure (DSSP)



TTTT


S

SSGGGG

SS


TT
TT



SS


GGG
 .........360..
Sequence VVIKEEFRDYYE
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Known secondary structure (DSSP)
GGG


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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