PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1vw4O_

Fold library id	PDB Header	Molecule	Title
c1vw4O_	PDB header: ribosome	Chain: O: PDB Molecule: 54s ribosomal protein l22, mitochondrial;	PDBTitle: structure of the yeast mitochondrial large ribosomal subunit

Links to external resources
Added to library: Sat Apr 12 08:24:39 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence I T I E D K L L Q Q H I I S L Q Q P E Q L A S Q S L L S P L K R E I Y E A N C K I N G G F Y K K D T I V K L P N S S E R Y K L K L T K R E I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
S
T T T S
S S
S S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E V L E P S V Y A Q S Y R I K S S M K K A T L L L R L L G G L D V M K A I S Q C H F S N K K I A R E V A E L L Q K G V K D G Q K L G L K P E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
B S S
G G G T T
B
T
G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D L Y I S Q I W T G S D G F W R K R V E F K A R T R I G I I S H P Y I H V R C I L R T K S V T K R R L A Y E A H L K E Q K R A P W V Q L G D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G
S
S T T
T T T S
T T

. . . . . . . . . 220 . . .

Sequence K P I R G V T G G V Y K W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	I	T	I	E	D	K	L	L	Q	Q	H	I	I	S	L	Q	Q	P	E	Q	L	A	S	Q	S	L	L	S	P	L	K	R	E	I	Y	E	A	N	C	K	I	N	G	G	F	Y	K	K	D	T	I	V	K	L	P	N	S	S	E	R	Y	K	L	K	L	T	K	R	E	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																S			S								S															T	T	T	S			S	S						S	S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	V	L	E	P	S	V	Y	A	Q	S	Y	R	I	K	S	S	M	K	K	A	T	L	L	L	R	L	L	G	G	L	D	V	M	K	A	I	S	Q	C	H	F	S	N	K	K	I	A	R	E	V	A	E	L	L	Q	K	G	V	K	D	G	Q	K	L	G	L	K	P	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S										B	S	S										G	G	G	T	T		B																																		T			G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	L	Y	I	S	Q	I	W	T	G	S	D	G	F	W	R	K	R	V	E	F	K	A	R	T	R	I	G	I	I	S	H	P	Y	I	H	V	R	C	I	L	R	T	K	S	V	T	K	R	R	L	A	Y	E	A	H	L	K	E	Q	K	R	A	P	W	V	Q	L	G	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G												S										S	T	T																			T	T	T																S					T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.
Sequence	K	P	I	R	G	V	T	G	G	V	Y	K	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S				S	S