PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c1vw4J_

Fold library id	PDB Header	Molecule	Title
c1vw4J_	PDB header: ribosome	Chain: J: PDB Molecule: 54s ribosomal protein l10, mitochondrial;	PDBTitle: structure of the yeast mitochondrial large ribosomal subunit

Links to external resources
Added to library: Sat Apr 12 08:22:35 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence V S I L G Q L K P S D G S T K S F K R L G R G P S S G L G K T S G R G Q K G Q K A R G K V K S W F E G G Q T P I Y K L F P K I G F T N V G A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G
T T S
S S
S T T S S
T T T T S
S S S S T T S S
T T
T T S
S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K P L K E L N L K R I Q W F H D K N R L H L Q P G E V L D M N K M R K L G L V T G P I K Y G V K I L A S G K F H Y N L P I A L E A S R A S A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S S S S
S S S
S
S S
S S
T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K A I A A I E K A G G K F T A R Y Y T P L G L R A H L N P Q W F L E K R G R V P L Q A R P T K R R D I D F Y S K E E K R G Y L V M E K D K L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
S
T T T T B T T

. . . . . . . . . 220

Sequence L Q D I K E A Q N K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	V	S	I	L	G	Q	L	K	P	S	D	G	S	T	K	S	F	K	R	L	G	R	G	P	S	S	G	L	G	K	T	S	G	R	G	Q	K	G	Q	K	A	R	G	K	V	K	S	W	F	E	G	G	Q	T	P	I	Y	K	L	F	P	K	I	G	F	T	N	V	G	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			G	G	G	G					T	T	S								S	S		S	T	T	S	S		T	T	T	T	S		S	S	S	S	T	T	S	S				T	T			T	T	S							S								S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	P	L	K	E	L	N	L	K	R	I	Q	W	F	H	D	K	N	R	L	H	L	Q	P	G	E	V	L	D	M	N	K	M	R	K	L	G	L	V	T	G	P	I	K	Y	G	V	K	I	L	A	S	G	K	F	H	Y	N	L	P	I	A	L	E	A	S	R	A	S	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T					S	S	S	S											S	S	S		S			S	S							S	S		T	T										S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	A	I	A	A	I	E	K	A	G	G	K	F	T	A	R	Y	Y	T	P	L	G	L	R	A	H	L	N	P	Q	W	F	L	E	K	R	G	R	V	P	L	Q	A	R	P	T	K	R	R	D	I	D	F	Y	S	K	E	E	K	R	G	Y	L	V	M	E	K	D	K	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T																											S	S									S										T	T	T	T	B					T	T
	.	.	.	.	.	.	.	.	.	220
Sequence	L	Q	D	I	K	E	A	Q	N	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)