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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c1vw41_

Fold library idPDB HeaderMoleculeTitle
c1vw41_PDB header: ribosomeChain: 1: PDB Molecule: 54s ribosomal protein l35, mitochondrial;PDBTitle: structure of the yeast mitochondrial large ribosomal subunit


Added to library: Sat Apr 12 08:24:20 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence HIWSDFTTRPSSLSIQSSKVKNYLFQPSISRRSNRIKYSPPEHIDEIFRMSYDFLEQRSSKFYENPLKKD
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Known secondary structure (DSSP)
TTT

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S










TT


 .........80.........90.........100.........110.........120.........130.........140
Sequence ALLIKAEINNPEVQYNFQFNNKLNNVKDIIDYDVPVYRHLGKQHWESYGQMLLMQRLETLAAIPDTLPTL
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TS
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 .........150.........160.........170.........180.........190.........200.........210
Sequence VPRAEVNIKFPFSTGVNKWIEPGEFLSSNVTSMRPIFKIQEYELVNVEKQLYTVLIVNPDVPDLSNDSFK
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S

SSS



B

TT
B

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SS

SSS

TTTSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence TALCYGLVNINLTYNDNLIDPRKFHSSNIIADYLPPVPEKNAGKQRFVVWVFRQPLIQGPNMLEIDRKEL
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TTTS
 .........290.........300.........310.........320.........330..
Sequence SRDDFDIRQFTKKYNLTAIGAHIWRSEWDAKVAAVREKYGLPPGRVFSRVRR
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Known secondary structure (DSSP)

SS

T



TTT




B

SS


Download:PDB structure FASTA sequence

Hidden Markov model

View in Jmol



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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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