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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c1vw2H_

Fold library idPDB HeaderMoleculeTitle
c1vw2H_PDB header: toxinChain: H: PDB Molecule: tcda1;PDBTitle: crystal structure of tcda1


Added to library: Sat Mar 1 08:32:14 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SQCGFNCLTDISHSSFNEFRQQVSEHLSWSETHDLYHDAQQAQKDNRLYEARILKRANPQLQNAVHLAIL
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Known secondary structure (DSSP)

S

T
S
STTT

ST

SS



 .........80.........90.........100.........110.........120.........130.........140
Sequence APNAELIGYNNQFSGRASQYVAPGTVSSMFSPAAYLTELYREARNLHASDSVYYLDTRRPDLKSMALSQQ
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Known secondary structure (DSSP)

SSSSSS

B
TTSTTBTTSGGGS
TTSTT

T
B

 .........150.........160.........170.........180.........190.........200.........210
Sequence NMDIELSTLSLSNELLLESIKTESKLENYTKVMEMLSTFRPSGATPYHDAYENVREVIQLQDPGLEQLNA
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Known secondary structure (DSSP) S

BTTTT
SS

SSTT



SGGG
 .........220.........230.........240.........250.........260.........270.........280
Sequence SPAIAGLMHQASLLGINASISPELFNILTEEITEGNAEELYKKNFGNIEPASLAMPEYLKRYYNLSDEEL
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Known secondary structure (DSSP)
TTS
TT

S


TTTS
S

ST

 .........290.........300.........310.........320.........330.........340.........350
Sequence SQFIGKASNFGQQEYSNNQLITPVVNSSDGTVKVYRITREYTTNAYQMDVELFPFGGENYRLDYKFKNFY
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Known secondary structure (DSSP) S

B
SSS
B

BTTTTTT
SSS
TT

S

 .........360.........370.........380.........390.........400.........410.........420
Sequence NASYLSIKLNDKRELVRTEGAPQVNIEYSANITLNTADISQPFEIGLTRVLPSGSWAYAAAKFTVEEYNQ
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Known secondary structure (DSSP)

SSSSS

S


TT


S
TTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence YSFLLKLNKAIRLSRATELSPTILEGIVRSVNLQLDINTDVLGKVFLTKYYMQRYAIHAETALILCNAPI
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Known secondary structure (DSSP)


SSTT


SS

TTT


 .........500.........510.........520.........530.........540.........550.........560
Sequence SQRSYDNQPSQFDRLFNTPLLNGQYFSTGDEEIDLNSGSTGDWRKTILKRAFNIDDVSLFRLLKITDHDN
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Known secondary structure (DSSP)




TTS

SSS
SS





S




TT



T


TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence KDGKIKNNLKNLSNLYIGKLLADIHQLTIDELDLLLIAVGEGKTNLSAISDKQLATLIRKLNTITSWLHT
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Known secondary structure (DSSP)
SS

STT

T
TTS
SSS

 .........640.........650.........660.........670.........680.........690.........700
Sequence QKWSVFQLFIMTSTSYNKTLTPEIKNLLDTVYHGLQGFDKDKADLLHVMAPYIAATLQLSSENVAHSVLL
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Known secondary structure (DSSP) T










TSS

TTTS
STT

 .........710.........720.........730.........740.........750.........760.........770
Sequence WADKLQPGDGAMTAEKFWDWLNTKYTPGSSEAVETQEHIVQYCQALAQLEMVYHSTGINENAFRLFVTKP
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Known secondary structure (DSSP)

SSS




TT
S


TT


G
 .........780.........790.........800.........810.........820.........830.........840
Sequence EMFGAATGAAPAHDALSLIMLTRFADWVNALGEKASSVLAAFEANSLTAEQLADAMNLDANLLLQASIQA
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Known secondary structure (DSSP) GGGT

SSS



SGGGTT


TTTT

 .........850.........860.........870.........880.........890.........900.........910
Sequence QNHQHLPPVTPENAFSCWTSINTILQWVNVAQQLNVAPQGVSALVGLDYIQSMKETPTYAQWENAAGVLT
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Known secondary structure (DSSP) S

SS


TTTTTTSTTS
T
TTGGGSS


 .........920.........930.........940.........950.........960.........970.........980
Sequence AGLNSQQANTLHAFLDESRSAALSTYYIRQVAKAAAAIKSRDDLYQYLLIDNQVSAAIKTTRIAEAIASI
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Known secondary structure (DSSP) S

SSS
SSS


SSS
SSS
S

B

 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence QLYVNRALENVEENANSGVISRQFFIDWDKYNKRYSTWAGVSQLVYYPENYIDPTMRIGQTKMMDALLQS
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Known secondary structure (DSSP) TT
SS


TST




SS

TTT

SS

TT

 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence VSQSQLNADTVEDAFMSYLTSFEQVANLKVISAYHDNINNDQGLTYFIGLSETDAGEYYWRSVDHSKFND
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Known secondary structure (DSSP) T
SS


SSSSSTTSS
SSS
STT

S
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence GKFAANAWSEWHKIDCPINPYKSTIRPVIYKSRLYLLWLEQKEITKQYQTETDYRYELKLAHIRYDGTWN
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Known secondary structure (DSSP) SS

SSSB


B


S



SSS

TT



B
TTS
B
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence TPITFDVNKKISELKLEKNRAPGLYCAGYQGEDTLLVMFYNQQDTLDSYKNASMQGLYIFADMASKDMTP
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Known secondary structure (DSSP)


S


SS



BSSSSS

S

SSS

TT



SSS

 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence EQSNVYRDNSYQQFDTNNVRRVNNRYAEDYEIPSSVSSRKDYGWGDYYLSMVYNGDIPTINYKAASSDLK
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Known secondary structure (DSSP) SSSSS

TT






B
SS

S
B
S
S

B

SSSS
B




B

TT
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence IYISPKLRIIHNGYEGQKRNQCNLMNKYGKLGDKFIVYTSLGVNPNNSSNKLMFYPVYQYSGNTSGLNQG
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Known secondary structure (DSSP)


B



TTS
TT


SSS
SSS


SSTT

S
S
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence RLLFHRDTTYPSKVEAWIPGAKRSLTNQNAAIGDDYATDSLNKPDDLKQYIFMTDSKGTATDVSGPVEIN
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Known secondary structure (DSSP)



S

TTT


SS
TT

TTGGGS
SSS
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence TAISPAKVQIIVKAGGKEQTFTADKDVSIQPSPSFDEMNYQFNALEIDGSGLNFINNSASIDVTFTAFAE
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Known secondary structure (DSSP)

B
TTT
TT


SS




SS


S
S
S

BTTBT
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence DGRKLGYESFSIPVTLKVSTDNALTLHHNENGAQYMQWQSYRTRLNTLFARQLVARATTGIDTILSMETQ
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Known secondary structure (DSSP) TS


SS





TTS

TT



TS
TS
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence NIQEPQLGKGFYATFVIPPYNLSTHGDERWFKLYIKHVVDNNSHIIYSGQLTDTNINITLFIPLDDVPLN
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Known secondary structure (DSSP) T



SS

SS
SS
SSS


SSSSSS



SS



SS
S
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence QDYHAKVYMTFKKSPSDGTWWGPHFVRDDKGIVTINPKSILTHFESVNVLNNISSEPMDFSGANSLYFWE
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Known secondary structure (DSSP) SS
STTB


SSS
S
TTT
SS



SSS
S




TTSSS
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence LFYYTPMLVAQRLLHEQNFDEANRWLKYVWSPSGYIVHGQIQNYQWNVRPLLEDTSWNSDPLDSVDPDAV
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Known secondary structure (DSSP) TTT
TTB
TT

TT
S
SBSSTT



S
GGGS

 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence AQHDPMHYKVSTFMRTLDLLIARGDHAYRQLERDTLNEAKMWYMQALHLLGDKPYLPLSTTWSDPRLDRA
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Known secondary structure (DSSP)
TTT


S




SS
S



B
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence ADITTQNAHDSAIVALRQNIPTRSANTLTDLFLPQINEVMMNYWQTLAQRVYNLRHNLSIDGQPLYLPIY
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Known secondary structure (DSSP) T
TT




TTGGGSS
B
B

SS

SS


SS



 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence ATPADPKALLSAAVATSQGGGKLPESFMSLWRFPHMLENARGMVSQLTQFGSTLQNIIERQDAEALNALL
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Known secondary structure (DSSP)




























SB
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence QNQAAELILTNLSIQDKTIEELDAEKTVLEKSKAGAQSRFDSYGKLYDENINAGENQAMTLRASAAGLTT
Predicted secondary structure




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Known secondary structure (DSSP) S
S
S
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence AVQASRLAGAAADLVPNIFGFAGGGSRWGAIAEATGYVMEFSANVMNTEADKISQSETYRRRRQEWEIQR
Predicted secondary structure








SS confidence





































































Known secondary structure (DSSP) TSS
SS
SSS




TT
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence NNAEAELKQIDAQLKSLAVRREAAVLQKTSLKTQQEQTQSQLAFLQRKFSNQALYNWLRGRLAAIYFQFY
Predicted secondary structure



SS confidence





































































Known secondary structure (DSSP) SSS
 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence DLAVARCLMAEQAYRWELNDDSARFIKPGAWQGTYAGLLAGETLMLSLAQMEDAHLKRDKRALEVERTVS
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Known secondary structure (DSSP) SS







S
SS
SSSSSTT



 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence LAEVYAGLPKDNGPFSLAQEIDKLVSQGSGSAGSGNNNLAFGAGTDTKTSLQASVSFADLKIREDYPASL
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Known secondary structure (DSSP) TS
SSS




TT
SSTTS

SSSTTSSSTGGGTS
TTT
 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence GKIRRIKQISVTLPALLGPYQDVQAILSYGDKAGLANGCEALAVSHGMNDSGQFQLDFNDGKFLPFEGIA
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Known secondary structure (DSSP)
S






SS



S


S

SSTT

S
SSSSSS

TT
SB

TTTT
B
 .........2460.........2470.........2480.........2490
Sequence IDQGTLTLSFPNASMPEKGKQATMLKTLNDIILHIRYTIK
Predicted secondary structure















SS confidence







































Known secondary structure (DSSP) SSS
TT

SSS

TT
S



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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