PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1vsgB_

Fold library id	PDB Header	Molecule	Title
c1vsgB_	PDB header: glycoprotein	Chain: B: PDB Molecule: variant surface glycoprotein mitat 1.2;	PDBTitle: 2.9 angstroms resolution structure of the n-terminal domain2 of a variant surface glycoprotein from trypanosoma brucei

Links to external resources
Added to library: Tue Mar 16 14:09:36 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A A E K G F K Q A F W Q P L C Q V S E E L D D Q P K G A L F T L Q A A A S K I Q K M R D A A L R A S I Y A E I N H G T N R A K A A V I V A N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence H Y A M K A D S G L E A L K Q T L S S Q E V T A T A T A S Y L K G R I D E Y L N L L L Q T K E S G T S G C M M D T S G T N T V T K A G G T I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T S B B
T T S S S B
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G G V P C K L Q L S P I Q P K R P A A T Y L G K A G Y V G L T R Q A D A A N N F H D N D A E C R L A S G H N T N G L G K S G Q L S A A V T M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
S S T T T T
S
T
G G G
S S T T T S S
S S S
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence A A G Y V T V A N S Q T A V T V Q A L D A L Q E A S G A A H Q P W I D A W K A K K A L T G A E T A E F R N E T A G I A G K T G V T K L V E E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T
S S S
T T
S S
T T T
T T S G G G S
S
G G G S S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence A L L K K K D S E A S E I Q T E L K K Y F S G H E N E Q W T A I E K L I S E Q P V A Q N L V G D N Q P T K L G E L E G N A K L T T I L A Y Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
S S
S S S S
B
G G G S
S S
B G G G

. . . . . . . . . 360 . .

Sequence R M E T A G K F E V L T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	A	E	K	G	F	K	Q	A	F	W	Q	P	L	C	Q	V	S	E	E	L	D	D	Q	P	K	G	A	L	F	T	L	Q	A	A	A	S	K	I	Q	K	M	R	D	A	A	L	R	A	S	I	Y	A	E	I	N	H	G	T	N	R	A	K	A	A	V	I	V	A	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T																			T																																		T	T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	H	Y	A	M	K	A	D	S	G	L	E	A	L	K	Q	T	L	S	S	Q	E	V	T	A	T	A	T	A	S	Y	L	K	G	R	I	D	E	Y	L	N	L	L	L	Q	T	K	E	S	G	T	S	G	C	M	M	D	T	S	G	T	N	T	V	T	K	A	G	G	T	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T																																	T	T			S	B	B		T	T	S	S	S	B					T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	G	V	P	C	K	L	Q	L	S	P	I	Q	P	K	R	P	A	A	T	Y	L	G	K	A	G	Y	V	G	L	T	R	Q	A	D	A	A	N	N	F	H	D	N	D	A	E	C	R	L	A	S	G	H	N	T	N	G	L	G	K	S	G	Q	L	S	A	A	V	T	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T						S												S	S			T	T			T	T					S						T								G	G	G		S	S	T	T	T	S	S		S	S	S			S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	A	A	G	Y	V	T	V	A	N	S	Q	T	A	V	T	V	Q	A	L	D	A	L	Q	E	A	S	G	A	A	H	Q	P	W	I	D	A	W	K	A	K	K	A	L	T	G	A	E	T	A	E	F	R	N	E	T	A	G	I	A	G	K	T	G	V	T	K	L	V	E	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T	T					S	S	S									T	T					S	S		T	T												T				T	T	S	G	G	G	S				S		G	G	G	S	S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	A	L	L	K	K	K	D	S	E	A	S	E	I	Q	T	E	L	K	K	Y	F	S	G	H	E	N	E	Q	W	T	A	I	E	K	L	I	S	E	Q	P	V	A	Q	N	L	V	G	D	N	Q	P	T	K	L	G	E	L	E	G	N	A	K	L	T	T	I	L	A	Y	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	S			S	S															S	S	S	S															B			G	G	G	S		S	S				B	G	G	G
	.	.	.	.	.	.	.	.	.	360	.	.
Sequence	R	M	E	T	A	G	K	F	E	V	L	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)