PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1vgpA_

Fold library id	PDB Header	Molecule	Title
c1vgpA_	PDB header: transferase	Chain: A: PDB Molecule: 373aa long hypothetical citrate synthase;	PDBTitle: crystal structure of an isozyme of citrate synthase from2 sulfolbus tokodaii strain7

Links to external resources
Added to library: Tue Mar 16 12:37:31 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M E I K K G L E D V Y V K E T E I T Y I D G E L G R L Y Y R G Y S I Y D L A E F S N F E E V S Y L I L Y G K L P N R E E L N W F Q E K L R E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
S S T T T T T T
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E R Y L P D F I I K F L R E V R K D A Q P M D I L R T A V S L L G I E D S K N D E R T D I K G I K L I S K F P T I V A N Y A R L R K G L D I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
T T S
S S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I E P D P K L S H S E N F L Y M L Y G D R P N E I K S K A M D V T L I L H I D H E M N A S T F A S L V V A S T F S D L Y S S I V A G I S A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S S
T T S
S
T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence K G P L H G G A N Y E A L K M F K E I G S P E K V N D Y I L N R L S N K Q R I M G F G H R V Y K T Y D P R A R I L K Q Y A K L L A E K E G G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T S S S
S
S S S S T T
T T B
S S
S S
S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence E I Y T L Y Q I A E K V E E I G I K Y L G P K G I Y P N V D F F S S I V F Y S L G F E P D F F P A V F A S A R V V G W V A H I M E Y I K D N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G T
B
T T
G G G G G G

. . . . . . . . . 360 . . . . . . . . . 370 . . .

Sequence K I I R P K A Y Y K G E I G K K Y I P I D S R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	E	I	K	K	G	L	E	D	V	Y	V	K	E	T	E	I	T	Y	I	D	G	E	L	G	R	L	Y	Y	R	G	Y	S	I	Y	D	L	A	E	F	S	N	F	E	E	V	S	Y	L	I	L	Y	G	K	L	P	N	R	E	E	L	N	W	F	Q	E	K	L	R	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T		T	T							S	S					T	T	T	T					T	T																						S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	R	Y	L	P	D	F	I	I	K	F	L	R	E	V	R	K	D	A	Q	P	M	D	I	L	R	T	A	V	S	L	L	G	I	E	D	S	K	N	D	E	R	T	D	I	K	G	I	K	L	I	S	K	F	P	T	I	V	A	N	Y	A	R	L	R	K	G	L	D	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T														S		T	T	S																					S	S																									T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	E	P	D	P	K	L	S	H	S	E	N	F	L	Y	M	L	Y	G	D	R	P	N	E	I	K	S	K	A	M	D	V	T	L	I	L	H	I	D	H	E	M	N	A	S	T	F	A	S	L	V	V	A	S	T	F	S	D	L	Y	S	S	I	V	A	G	I	S	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	S												S	S																T	T	S			S													T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	K	G	P	L	H	G	G	A	N	Y	E	A	L	K	M	F	K	E	I	G	S	P	E	K	V	N	D	Y	I	L	N	R	L	S	N	K	Q	R	I	M	G	F	G	H	R	V	Y	K	T	Y	D	P	R	A	R	I	L	K	Q	Y	A	K	L	L	A	E	K	E	G	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T		T	T	S	S	S												S		S	S	S	S											T	T				T	T	B			S	S		S	S																					S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	E	I	Y	T	L	Y	Q	I	A	E	K	V	E	E	I	G	I	K	Y	L	G	P	K	G	I	Y	P	N	V	D	F	F	S	S	I	V	F	Y	S	L	G	F	E	P	D	F	F	P	A	V	F	A	S	A	R	V	V	G	W	V	A	H	I	M	E	Y	I	K	D	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																					G	G	G	T			B													T	T			G	G	G																					G	G	G
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Sequence	K	I	I	R	P	K	A	Y	Y	K	G	E	I	G	K	K	Y	I	P	I	D	S	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S									S	T	T