PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1vgmB_

Fold library id	PDB Header	Molecule	Title
c1vgmB_	PDB header: transferase	Chain: B: PDB Molecule: 378aa long hypothetical citrate synthase;	PDBTitle: crystal structure of an isozyme of citrate synthase from2 sulfolbus tokodaii strain7

Links to external resources
Added to library: Tue Mar 16 14:22:45 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence V E V S R G L E N V I I K T T G L T Y I D G I N G I L R Y R G Y D I N D L V N Y A S Y E E L I H L M L Y G E L P N R Q Q L N Q I K G I I N E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G T T
S S T T T T T T
S S
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S F E V P E Q V I S T I F S M P R N C D A I G M M E T A F G I L A S I Y D P K W N R A T N K E L A V Q I I A K T A T I T A N I Y R A K E G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T S
T T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K P K I P E P S E S Y A E S F L A A T F G K K P T Q E E I K A M D A S L I L Y T D H E V P A S T T A A L V A S S T L S D M Y S C I V A A L A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T S
T S
S
T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence A L K G P L H G G A A E E A F K Q F V E I G S V E N A D K W F E E K I I K G K S R L M G F G H R V Y K T Y D P R A K I F K T L A K S F A E K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S T T T S
S G G G T T T T S S
S S
S S
S S
T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence N E N V K K Y Y E I A E R I E K L G V D T F G S K H I Y P N T D F Y S G I V F Y A L G F P I Y M F T S L F A L S R V L G W L A H I I E Y V E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T T
T T
G G G

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . .

Sequence E Q H R L I R P R A L Y I G P E K R E F K P I E L R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
G G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	V	E	V	S	R	G	L	E	N	V	I	I	K	T	T	G	L	T	Y	I	D	G	I	N	G	I	L	R	Y	R	G	Y	D	I	N	D	L	V	N	Y	A	S	Y	E	E	L	I	H	L	M	L	Y	G	E	L	P	N	R	Q	Q	L	N	Q	I	K	G	I	I	N	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					G	G	G	T	T							S	S					T	T	T	T					T	T																						S	S																T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	F	E	V	P	E	Q	V	I	S	T	I	F	S	M	P	R	N	C	D	A	I	G	M	M	E	T	A	F	G	I	L	A	S	I	Y	D	P	K	W	N	R	A	T	N	K	E	L	A	V	Q	I	I	A	K	T	A	T	I	T	A	N	I	Y	R	A	K	E	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															S		T	T	S																							T	T	T																								T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	P	K	I	P	E	P	S	E	S	Y	A	E	S	F	L	A	A	T	F	G	K	K	P	T	Q	E	E	I	K	A	M	D	A	S	L	I	L	Y	T	D	H	E	V	P	A	S	T	T	A	A	L	V	A	S	S	T	L	S	D	M	Y	S	C	I	V	A	A	L	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S												T	S																	T	S			S													T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	A	L	K	G	P	L	H	G	G	A	A	E	E	A	F	K	Q	F	V	E	I	G	S	V	E	N	A	D	K	W	F	E	E	K	I	I	K	G	K	S	R	L	M	G	F	G	H	R	V	Y	K	T	Y	D	P	R	A	K	I	F	K	T	L	A	K	S	F	A	E	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	S	T	T	T	S															S	G	G	G									T	T	T	T	S	S			S	S				S	S		S	S																	T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	N	E	N	V	K	K	Y	Y	E	I	A	E	R	I	E	K	L	G	V	D	T	F	G	S	K	H	I	Y	P	N	T	D	F	Y	S	G	I	V	F	Y	A	L	G	F	P	I	Y	M	F	T	S	L	F	A	L	S	R	V	L	G	W	L	A	H	I	I	E	Y	V	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																					T	T		T	T	T																T	T			G	G	G
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Sequence	E	Q	H	R	L	I	R	P	R	A	L	Y	I	G	P	E	K	R	E	F	K	P	I	E	L	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S												S									G	G	G