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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c1vcaA_

Fold library idPDB HeaderMoleculeTitle
c1vcaA_PDB header: cell adhesion proteinChain: A: PDB Molecule: human vascular cell adhesion molecule-1;PDBTitle: crystal structure of an integrin-binding fragment of2 vascular cell adhesion molecule-1 at 1.8 angstroms3 resolution


Added to library: Tue Mar 16 12:29:54 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence FKIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYL
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Known secondary structure (DSSP)
SSSTTS
S
SS
TT



SSTTSS

GGG
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence CTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEF
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Known secondary structure (DSSP) TTB

S

SS
TTS
BSGGGTT
 .........150.........160.........170.........180.........190.........
Sequence LEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISP
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Known secondary structure (DSSP)
S

SS





GGGTT

S


TTS
S





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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