PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1vcaA_

Fold library id	PDB Header	Molecule	Title
c1vcaA_	PDB header: cell adhesion protein	Chain: A: PDB Molecule: human vascular cell adhesion molecule-1;	PDBTitle: crystal structure of an integrin-binding fragment of2 vascular cell adhesion molecule-1 at 1.8 angstroms3 resolution

Links to external resources
Added to library: Tue Mar 16 12:29:54 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence F K I E T T P E S R Y L A Q I G D S V S L T C S T T G C E S P F F S W R T Q I D S P L N G K V T N E G T T S T L T M N P V S F G N E H S Y L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S T T S
S
S S
T T
S S T T S S
G G G
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence C T A T C E S R K L E K G I Q V E I Y S F P K D P E I H L S G P L E A G K P I T V K C S V A D V Y P F D R L E I D L L K G D H L M K S Q E F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T B
S
S S
T T S
B S G G G T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . .

Sequence L E D A D R K S L E T K S L E V T F T P V I E D I G K V L V C R A K L H I D E M D S V P T V R Q A V K E L Q V Y I S P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S
G G G T T
S
T T S
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	F	K	I	E	T	T	P	E	S	R	Y	L	A	Q	I	G	D	S	V	S	L	T	C	S	T	T	G	C	E	S	P	F	F	S	W	R	T	Q	I	D	S	P	L	N	G	K	V	T	N	E	G	T	T	S	T	L	T	M	N	P	V	S	F	G	N	E	H	S	Y	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	S	S						T	T	S										S		S	S								T	T					S	S						T	T							S	S			G	G	G		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	C	T	A	T	C	E	S	R	K	L	E	K	G	I	Q	V	E	I	Y	S	F	P	K	D	P	E	I	H	L	S	G	P	L	E	A	G	K	P	I	T	V	K	C	S	V	A	D	V	Y	P	F	D	R	L	E	I	D	L	L	K	G	D	H	L	M	K	S	Q	E	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T													B			S							S	S				T	T	S												B	S	G	G	G								T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Sequence	L	E	D	A	D	R	K	S	L	E	T	K	S	L	E	V	T	F	T	P	V	I	E	D	I	G	K	V	L	V	C	R	A	K	L	H	I	D	E	M	D	S	V	P	T	V	R	Q	A	V	K	E	L	Q	V	Y	I	S	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S			S	S																G	G	G	T	T											S				T	T	S		S