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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c1uf2F_

Fold library idPDB HeaderMoleculeTitle
c1uf2F_PDB header: virusChain: F: PDB Molecule: outer capsid protein p8;PDBTitle: the atomic structure of rice dwarf virus (rdv)


Added to library: Tue Mar 16 13:21:37 2010
 
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 1........10.........20.........30.........40.........50.........60.........70
Sequence MSRQMWLDTSALLEAISEYVVRCNGDTFSGLTTGDFNALSNMFTQLSVSDPRVPLQTMSNMFVSFITSTD
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Known secondary structure (DSSP)

TT


SS


TT



TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence RCGYMLRKTWFNSDTKPTVSDDFITTYIRPRLQVPMSDTVRQLNNLSLQPSAKPKLYERQNAIMKGLDIP
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Known secondary structure (DSSP) S









S

S
TTT
SS

SS






 .........150.........160.........170.........180.........190.........200.........210
Sequence YSEPIEPCKLFRSVAGQTGNIPMMGILATPPAAQQQPFFVAERRRILFGIRSNAAIPAGAYQFVVPAWAS
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Known secondary structure (DSSP) TT
B





SS
S
STTTS

SS




SS

SS
B
S

TTGG
 .........220.........230.........240.........250.........260.........270.........280
Sequence VLSVTGAYVYFTNSFFGTIIAGVTATATAADAATTFTVPTDANNLPVQTDSRLSFSLGGGNINLELGVAK
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Known secondary structure (DSSP) G
STT

S





TTS


TTSS
S

GGGSSS
B
 .........290.........300.........310.........320.........330.........340.........350
Sequence TGFCVAIEGEFTILANRSQAYYTLNSITQTPTSIDDFDVSDFLTTFLSQLRACGQYEIFSDAMDQLTNSL
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Known secondary structure (DSSP) SS
TT
STTTT

SSS




TTTTT
 .........360.........370.........380.........390.........400.........410.....
Sequence ITNYMDPPAIPAGLAFTSPWFRFSERARTILALQNVDLNIRKLIVRHLWVITSLIAVFGRYYRPN
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Known secondary structure (DSSP) TTSTTTS

SS


SS
TT
T
SSS
SSTT




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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