PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1s1iK_

Fold library id	PDB Header	Molecule	Title
c1s1iK_	PDB header: ribosome	Chain: K: PDB Molecule: 60s ribosomal protein l12;	PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h.

Links to external resources
Added to library: Tue Mar 16 12:31:46 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L Y L R A V G G E V G A S A A L A P K I G P L G L S P K K V G E D I A K A T K E F K G I K V T V Q L K I Q N R Q A A A S V V P S A S S L V I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T T T G G G T
T T T S
S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 .

Sequence T A L K E P P R D R K K D K N V K H S G N I Q L D E I I E I A R Q M R D K S F G R T L A S V T K E I L G T A Q S V G C R V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S
S S T T T
T T T
T T T
S S T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	Y	L	R	A	V	G	G	E	V	G	A	S	A	A	L	A	P	K	I	G	P	L	G	L	S	P	K	K	V	G	E	D	I	A	K	A	T	K	E	F	K	G	I	K	V	T	V	Q	L	K	I	Q	N	R	Q	A	A	A	S	V	V	P	S	A	S	S	L	V	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T					T	T	T	T					G	G	G	T														T	T	T	S		S											T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Sequence	T	A	L	K	E	P	P	R	D	R	K	K	D	K	N	V	K	H	S	G	N	I	Q	L	D	E	I	I	E	I	A	R	Q	M	R	D	K	S	F	G	R	T	L	A	S	V	T	K	E	I	L	G	T	A	Q	S	V	G	C	R	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T		S	S			S	S	T	T	T			T	T	T																T	T	T				S	S																T