PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c1r7mA_

Fold library id	PDB Header	Molecule	Title
c1r7mA_	PDB header: hydrolase/dna	Chain: A: PDB Molecule: intron-encoded endonuclease i-scei;	PDBTitle: the homing endonuclease i-scei bound to its dna recognition2 region

Links to external resources
Added to library: Tue Mar 16 13:48:21 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N I K K N Q V M N L G P N S K L L K E Y K S Q L I E L N I E Q F E A G I G L I L G D A Y I R S R D E G K T Y C M Q F E W K N K A Y M D H V C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
T T
S
T T
S S S S S
B S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L L Y D Q W V L S P P H K K E R V N H L G N L V I T W G A Q T F K H Q A F N K L A N L F I V N N K K T I P N N L V E N Y L T P M S L A Y W F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T G G G
S
T T S
B G G G T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence M D D G G K W D Y N K N S T N K S I V L N T Q S F T F E E V E Y L V K G L R N K F Q L N C Y V K I N K N K P I I Y I D S M S Y L I F Y N L I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
T T S
T T
G G G

. . . . . . . . . 220 . . .

Sequence K P Y L I P Q M M Y K L P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
G G G G G G

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	I	K	K	N	Q	V	M	N	L	G	P	N	S	K	L	L	K	E	Y	K	S	Q	L	I	E	L	N	I	E	Q	F	E	A	G	I	G	L	I	L	G	D	A	Y	I	R	S	R	D	E	G	K	T	Y	C	M	Q	F	E	W	K	N	K	A	Y	M	D	H	V	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	S		T	T													S															T	T						S	S	S	S	S		B							S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	L	Y	D	Q	W	V	L	S	P	P	H	K	K	E	R	V	N	H	L	G	N	L	V	I	T	W	G	A	Q	T	F	K	H	Q	A	F	N	K	L	A	N	L	F	I	V	N	N	K	K	T	I	P	N	N	L	V	E	N	Y	L	T	P	M	S	L	A	Y	W	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	G	G	G			S										T	T	S													B	G	G	G										T	T						T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	M	D	D	G	G	K	W	D	Y	N	K	N	S	T	N	K	S	I	V	L	N	T	Q	S	F	T	F	E	E	V	E	Y	L	V	K	G	L	R	N	K	F	Q	L	N	C	Y	V	K	I	N	K	N	K	P	I	I	Y	I	D	S	M	S	Y	L	I	F	Y	N	L	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S				T	T											T	T	S																										T	T								G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.
Sequence	K	P	Y	L	I	P	Q	M	M	Y	K	L	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T			G	G	G	G	G	G