PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1pnuE_

Fold library id	PDB Header	Molecule	Title
c1pnuE_	PDB header: ribosome	Chain: E: PDB Molecule: 50s ribosomal protein l6;	PDBTitle: crystal structure of a streptomycin dependent ribosome from2 escherichia coli, 50s subunit of 70s ribosome. this file,3 1pnu, contains only molecules of the 50s ribosomal4 subunit. the 30s subunit, mrna, p-site trna, and a-site5 trna are in the pdb file 1pns.

Links to external resources
Added to library: Tue Mar 16 14:10:32 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G K Q P I A V P S G V T V N A Q D G V F K V K G P K G E L T V P Y N T E L T V R Q D G D Q L L V E R P S D A Q K H R A L H G L T R T L V A N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T S
B
S S S
B
S S
T T
S
S T T T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A V K G V S D G Y T I N L E L R G V G F R A K L T G K A L E M N I G Y S H P V I I E P P A G V T F A V P E P T R I D V S G I D K Q L V G Q V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S
T T S S
S T T
S S
B
S T T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . .

Sequence A A N V R K V R K P D A Y H G K G V R F V G E Q I A L K A G K A G A T G G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S
T T S
S
B S S S
S S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	K	Q	P	I	A	V	P	S	G	V	T	V	N	A	Q	D	G	V	F	K	V	K	G	P	K	G	E	L	T	V	P	Y	N	T	E	L	T	V	R	Q	D	G	D	Q	L	L	V	E	R	P	S	D	A	Q	K	H	R	A	L	H	G	L	T	R	T	L	V	A	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S	S						T	T	S			B			S	S	S				B					S	S							T	T							S			S	T	T	T	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	V	K	G	V	S	D	G	Y	T	I	N	L	E	L	R	G	V	G	F	R	A	K	L	T	G	K	A	L	E	M	N	I	G	Y	S	H	P	V	I	I	E	P	P	A	G	V	T	F	A	V	P	E	P	T	R	I	D	V	S	G	I	D	K	Q	L	V	G	Q	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S										S	S							T	T	S	S						S	T	T									S	S				B		S	T	T	T							S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Sequence	A	A	N	V	R	K	V	R	K	P	D	A	Y	H	G	K	G	V	R	F	V	G	E	Q	I	A	L	K	A	G	K	A	G	A	T	G	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	S	S				T	T	S			S		B	S	S	S									S	S		T	T