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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c1ojlD_

Fold library idPDB HeaderMoleculeTitle
c1ojlD_PDB header: response regulatorChain: D: PDB Molecule: transcriptional regulatory protein zrar;PDBTitle: crystal structure of a sigma54-activator suggests the2 mechanism for the conformational switch necessary for3 sigma54 binding


Added to library: Thu Jan 10 06:19:37 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESE
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Known secondary structure (DSSP)




S
STT

S
TTS
SS
SSS

TT

 .........80.........90.........100.........110.........120.........130.........140
Sequence LFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIA
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Known secondary structure (DSSP) S
B
TTS
SS



B

STGGGTTSS
TT

SS

SSS





 .........150.........160.........170.........180.........190.........200.........210
Sequence ATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLL
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Known secondary structure (DSSP) SS
TTSS
TT


GGGGTTTTT




B
 .........220.........230.........240.........250.........260.........270.........280
Sequence IHYDWPGNIRELENAIERAVVLLTGEYISERELPLAIAATPIKEIQPLVDVEKEVILAALEKTGGNKTEA
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Known secondary structure (DSSP) T


TT

SSSB
GGGS
GGG









TTTT
 .........290.......
Sequence ARQLGITRKTLLAKLSR
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Known secondary structure (DSSP) TS
T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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