PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1oizA_

Fold library id	PDB Header	Molecule	Title
c1oizA_	PDB header: transport	Chain: A: PDB Molecule: alpha-tocopherol transfer protein;	PDBTitle: the molecular basis of vitamin e retention: structure of2 human alpha-tocopherol transfer protein

Links to external resources
Added to library: Tue Mar 16 13:56:45 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S A G P Q L N A L P D H S P L L Q P G L A A L R R R A R E A G V P L A P L P L T D S F L L R F L R A R D F D L D L A W R L L K N Y Y K W R A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S
T T
G G G T T
T T
T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E C P E I S A D L H P R S I I G L L K A G Y H G V L R S R D P T G S K V L I Y R I A H W D P K V F T A Y D V F R V S L I T S E L I V Q E V E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
G G G T T T
S S
T T
G G G
T T T
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence T Q R N G I K A I F D L E G W Q F S H A F Q I T P S V A K K I A A V L T D S F P L K V R G I H L I N E P V I F H A V F S M I K P F L T E K I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
T S S S S
S
G G G S
T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . .

Sequence K E R I H M H G N N Y K Q S L L Q H F P D I L P L E Y G G E E F S M E D I C Q E W T N F I M K S E D Y L S S I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G
S
S T T T S
G G G T
S S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	A	G	P	Q	L	N	A	L	P	D	H	S	P	L	L	Q	P	G	L	A	A	L	R	R	R	A	R	E	A	G	V	P	L	A	P	L	P	L	T	D	S	F	L	L	R	F	L	R	A	R	D	F	D	L	D	L	A	W	R	L	L	K	N	Y	Y	K	W	R	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	S		T	T		G	G	G														T	T				T	T															T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	C	P	E	I	S	A	D	L	H	P	R	S	I	I	G	L	L	K	A	G	Y	H	G	V	L	R	S	R	D	P	T	G	S	K	V	L	I	Y	R	I	A	H	W	D	P	K	V	F	T	A	Y	D	V	F	R	V	S	L	I	T	S	E	L	I	V	Q	E	V	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S				G	G	G	T						T	T						S	S			T	T									G	G	G			T	T	T																		T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	T	Q	R	N	G	I	K	A	I	F	D	L	E	G	W	Q	F	S	H	A	F	Q	I	T	P	S	V	A	K	K	I	A	A	V	L	T	D	S	F	P	L	K	V	R	G	I	H	L	I	N	E	P	V	I	F	H	A	V	F	S	M	I	K	P	F	L	T	E	K	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T							T	T															T	S	S	S	S									S													G	G	G	S		T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Sequence	K	E	R	I	H	M	H	G	N	N	Y	K	Q	S	L	L	Q	H	F	P	D	I	L	P	L	E	Y	G	G	E	E	F	S	M	E	D	I	C	Q	E	W	T	N	F	I	M	K	S	E	D	Y	L	S	S	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G						S										S	T	T	T	S		G	G	G	T		S	S																	T						T