PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1nb3D_

Fold library id	PDB Header	Molecule	Title
c1nb3D_	PDB header: hydrolase	Chain: D: PDB Molecule: cathepsin h;	PDBTitle: crystal structure of stefin a in complex with cathepsin h:2 n-terminal residues of inhibitors can adapt to the active3 sites of endo-and exopeptidases

Links to external resources
Added to library: Tue Mar 16 12:58:36 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Y P P S M D W R K K G N F V S P V K N Q G S C G S C W T F S T T G A L E S A V A I A T G K M L S L A E Q Q L V D C A Q N F N N H G C Q G G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S
S
B
T T S B
S
B
T T G G G G T
T T B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P S Q A F E Y I R Y N K G I M G E D T Y P Y K G Q D D H C K F Q P D K A I A F V K D V A N I T M N D E E A M V E A V A L Y N P V S F A F E V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
B
B T T T S
S S
G G G
B
S
T T
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence T N D F L M Y R K G I Y S S T S C H K T P D K V N H A V L A V G Y G E E N G I P Y W I V K N S W G P Q W G M N G Y F L I E R G K N M C G L A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S S
B
S S S
G G G
T T
S B
T T S T B T T S S S
G G G T T

. . . . . . . . . 220

Sequence A C A S Y P I P L V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Y	P	P	S	M	D	W	R	K	K	G	N	F	V	S	P	V	K	N	Q	G	S	C	G	S	C	W	T	F	S	T	T	G	A	L	E	S	A	V	A	I	A	T	G	K	M	L	S	L	A	E	Q	Q	L	V	D	C	A	Q	N	F	N	N	H	G	C	Q	G	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S								S	S		S					B		T	T	S	B																				S					B							T	T	G	G	G	G	T			T	T	B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	S	Q	A	F	E	Y	I	R	Y	N	K	G	I	M	G	E	D	T	Y	P	Y	K	G	Q	D	D	H	C	K	F	Q	P	D	K	A	I	A	F	V	K	D	V	A	N	I	T	M	N	D	E	E	A	M	V	E	A	V	A	L	Y	N	P	V	S	F	A	F	E	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T		B		B	T	T	T	S				S	S								G	G	G			B			S							T	T												T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	T	N	D	F	L	M	Y	R	K	G	I	Y	S	S	T	S	C	H	K	T	P	D	K	V	N	H	A	V	L	A	V	G	Y	G	E	E	N	G	I	P	Y	W	I	V	K	N	S	W	G	P	Q	W	G	M	N	G	Y	F	L	I	E	R	G	K	N	M	C	G	L	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T			S	S		B			S	S	S				G	G	G														T	T									S	B		T	T	S	T	B	T	T						S	S	S		G	G	G	T	T
	.	.	.	.	.	.	.	.	.	220
Sequence	A	C	A	S	Y	P	I	P	L	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T